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Conference article
2019

Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms

Vitali, F., Berghout, J., Fan, J., Li, J., Li, Q., Li, H. & Lussier, Y. A., Jan 1 2019, In : Pacific Symposium on Biocomputing. 24, 2019, p. 308-319 12 p.

Research output: Contribution to journalConference article

1 Scopus citations

Translational informatics of population health: How large biomolecular and clinical datasets unite

Lussier, Y. A., Butte, A. J., Li, H., Chen, R. & Moore, J. H., Jan 1 2019, In : Pacific Symposium on Biocomputing. 24, 2019, p. 455-459 5 p.

Research output: Contribution to journalConference article

Workshop during the pacific symposium of biocomputing, Jan 3-7, 2019: Reading between the genes: Interpreting non-coding DNA in high-throughput

Berghout, J., Lussier, Y. A., Vitali, F., Bulyk, M. L., Kann, M. G. & Moore, J. H., Jan 1 2019, In : Pacific Symposium on Biocomputing. 24, 2019, p. 444-448 5 p.

Research output: Contribution to journalConference article

2018

Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements

Han, J., Li, J., Achour, I., Pesce, L., Foster, I., Li, H. & Lussier, Y. A., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 524-535 12 p.

Research output: Contribution to journalConference article

1 Scopus citations

Emergence of pathway-level composite biomarkers from converging gene set signals of heterogeneous transcriptomic responses

Zaim, S. R., Li, Q., Schissler, A. G. & Lussier, Y. A., 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 484-495 12 p.

Research output: Contribution to journalConference article

1 Scopus citations

Reading between the genes: Computational models to discover function from noncoding DNA

Lussier, Y. A., Berghout, J., Vitali, F., Ramos, K. S., Kann, M. & Moore, J. H., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 507-511 5 p.

Research output: Contribution to journalConference article

Single subject transcriptome analysis to identify functionally signed gene set or pathway activity

Berghout, J., Li, Q., Pouladi, N., Li, J. & Lussier, Y. A., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 400-411 12 p.

Research output: Contribution to journalConference article

1 Scopus citations
2017

HIGH-RESOLUTION HYBRID DIGITAL-OPTICAL PROCESSOR FOR TRANSAXIAL TOMOGRAPHY.

Gmitro, A. F., Gindi, G. R., Greivenkamp, J. E., Barrett, H. H. & Swindell, W., Jan 1 2017, In : Proceedings of the Society of Photo-Optical Instrumentation Engineers. 231, p. 250-225 26 p.

Research output: Contribution to journalConference article

2016

The effect of a secondary task on identification accuracy of oxygen saturation ranges using an enhanced pulse oximetry sonification: A laboratory study

Paterson, E., Sanderson, P., Paterson, N., Liu, D. & Loeb, R., Jan 1 2016, In : Proceedings of the Human Factors and Ergonomics Society. p. 628-632 5 p.

Research output: Contribution to journalConference article

2014

Applications of angiosome classification model for monitoring disease progression in the diabetic feet

Bharara, M., Boulger, E., Grewal, G. S., Schoess, J. N. & Armstrong, D. G., Jan 1 2014, In : Simulation Series. 46, 10, p. 241-245 5 p.

Research output: Contribution to journalConference article

2 Scopus citations

A predictive analytics toolbox for medical applications

Valenzuela, M. L., Rozenblit, J. W. & Hamilton, A. J., Jan 1 2014, In : Simulation Series. 46, 10, p. 180-187 8 p.

Research output: Contribution to journalConference article

A systems approach to healthcare efficiency improvement

Monreal, J., Valerdi, R. & Daniel Latt, L., Jan 1 2014, In : Procedia Computer Science. 28, p. 610-618 9 p.

Research output: Contribution to journalConference article

Open Access

Cardiac arrhythmia visualization in a virtual heart for electrophysiology education

Xing, D., Rozenblit, J. W., Bernau, S. & Ott, P., Jan 1 2014, In : Simulation Series. 46, 10, p. 152-157 6 p.

Research output: Contribution to journalConference article

Open-source simulation of complex surgeries: Press "print" to disrupt

Giovinco, N. A., Miller, J. D., Najafi, B. & Armstrong, D. G., Jan 1 2014, In : Simulation Series. 46, 10, p. 376-378 3 p.

Research output: Contribution to journalConference article

Surgical navigation pointer facilitates identification of targets in a simulated environment

Prescher, H., Biffar, D. E., Galvani, C. A., Rozenblit, J. W. & Hamilton, A. J., Jan 1 2014, In : Simulation Series. 46, 10, p. 246-252 7 p.

Research output: Contribution to journalConference article

The comparison of high definition versus stereoscopic display on standardized fundamental laparoscopic skill procedures

Prescher, H., Biffar, D. E., Rozenblit, J. & Hamilton, A. J., Jan 1 2014, In : Simulation Series. 46, 10, p. 346-351 6 p.

Research output: Contribution to journalConference article

The computer assisted surgical trainer: Design, models, and implementation

Rozenblit, J. W., Feng, C., Riojas, M., Napalkova, L., Hamilton, A. J., Hong, M., Berthet-Rayne, P., Czapiewski, P., Hwang, G., Nikodem, J., Shankaran, A. & Rao, A., Jan 1 2014, In : Simulation Series. 46, 10, p. 211-220 10 p.

Research output: Contribution to journalConference article

13 Scopus citations

Thermography for in-vivo wound healing models

Anghel, E., Bharara, M., Armstrong, D. G., Heimark, R. L., Grewal, G. S. & Raza, O., Jan 1 2014, In : Simulation Series. 46, 10, p. 228-232 5 p.

Research output: Contribution to journalConference article

Using cadaver simulation to improve communication and economy of movement as evidence of progress with the trans-catheter aortic valve implantation (TAVI) learning curve

Parvaneh, S., Bhatnagar, S., Poston, R. & Najafi, B., Jan 1 2014, In : Simulation Series. 46, 10, p. 188-194 7 p.

Research output: Contribution to journalConference article

Video-guided versus direct laryngoscopy: Considerations for using simulation to teach inexperienced medical students

Prescher, H., Biffar, D. E., Meinke, L. E., Jarred, J. E., Brooks, A. J. & Hamilton, A. J., Jan 1 2014, In : Simulation Series. 46, 10, p. 253-258 6 p.

Research output: Contribution to journalConference article

2013

Self-pay trauma victims have a higher mortality rate than patients with different payment methods

Chikani, V., Salvino, C., Hussaini, K., Vossbrink, A., Ng, A. R., Bobrow, B., Skubic, J. & Martinez, R., Nov 27 2013, In : Annals of Advances in Automotive Medicine. 57, p. 345-346 2 p.

Research output: Contribution to journalConference article

2 Scopus citations

Thickness estimation with optical coherence tomography and statistical decision theory

Huang, J., Clarkson, E., Kupinski, M. & Rolland, J. P., Dec 1 2013, In : Optics InfoBase Conference Papers. p. 49-51 3 p.

Research output: Contribution to journalConference article

2010

Reconstruction of fast-scan MR images

Gmitro, A. F. & Chen, Y., Dec 1 2010, In : Proceedings of SPIE - The International Society for Optical Engineering. 1351, p. 331-342 12 p.

Research output: Contribution to journalConference article

2009

Clinical results with acridine orange using a novel confocal laparoscope

Tanbakuchi, A. A., Rouse, A. R., Hatch, K. D. & Gmitro, A. F., May 5 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7172, 71720H.

Research output: Contribution to journalConference article

Depolarization roperties of the normal human fovea

Lam, W. S. T., Chipmana, R. A., Twietmeyera, K. M., Zhouc, Y., Denninghoff, K. R., Elsnerc, A. E. & Burnsc, S. A., May 5 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7168, 716829.

Research output: Contribution to journalConference article

Flow acceleration effect on canser cell deformation abd detachment

Cheung, L. S. L., Zheng, X. J., Stopa, A., Schroeder, J., Heimark, R. L., Baygents, J. C., Guzman, R. & Zoharl, Y., Jun 1 2009, In : Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS). p. 431-434 4 p., 4805411.

Research output: Contribution to journalConference article

1 Scopus citations

Laparoscopic optical coherence tomographic imaging of human ovarian cancer

Hariri, L. P., Bonnema, G. T., Schmidt, K., Korde, V., Winkler, A. M., Hatch, K., Brewer, M. & Barton, J. K., Jun 8 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7169, 71690S.

Research output: Contribution to journalConference article

Tracking contrast agents using real-time 2D photoacoustic imaging system for cardiac applications

Olafsson, R., Montilla, L., Ingram, P. & Witte, R. S., Jun 8 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7177, 71771R.

Research output: Contribution to journalConference article

5 Scopus citations
2008

Adherence of platelet and fibrin targeted ultrasound contrast bubbles to human blood clots in vitro

Savitha, F., Forsberg, F., Gilmore, S. C., Shevchuk, S. V., Kerschen, A., Matsunaga, T. O. & Zutshi, R., Dec 1 2008, In : Proceedings - IEEE Ultrasonics Symposium. p. 349-352 4 p., 4803671.

Research output: Contribution to journalConference article

1 Scopus citations

Significance of epidermal growth factor receptor in the radiation resistance of glioblastoma tumors

Petrás, M., Lajtos, T., Pintye, É., Feuerstein, B. G., Szöllosi, J. & Vereb, G., Dec 1 2008, In : AIP Conference Proceedings. 1080, p. 204-217 14 p.

Research output: Contribution to journalConference article

2007

Invited paper: Influence of 8-bit vs 11-bit digital medical displays on observer performance and visual search

Krupinski, E. A., Roehrig, H. & Fan, J., Aug 22 2007, In : Digest of Technical Papers - SID International Symposium. 38, 2, p. 965-966 2 p.

Research output: Contribution to journalConference article

1 Scopus citations
2005

Automated texture-based identification of ovarian cancer in confocal microendoscope images

Srivastava, S., Rodríguez, J. J., Rouse, A. R., Brewer, M. A. & Gmitro, A. F., Jul 21 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5701, p. 42-52 11 p., 07.

Research output: Contribution to journalConference article

7 Scopus citations

Channelized model observer using a visual discrimination model

Johnson, J. P., Lubin, J., Nafziger, J. S., Krupinski, E. A. & Roehrig, H., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 199-210 12 p., 24.

Research output: Contribution to journalConference article

7 Scopus citations

Compensating for display deficiencies when displaying softcopy mammograms

Krupinski, E. A., Roehrig, H., Dallas, W. & Fan, J., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 394-400 7 p., 43.

Research output: Contribution to journalConference article

3 Scopus citations
3 Scopus citations

Evaluation of 8 bits versus 11 bits softcopy displays

Roehrig, H., Fan, J., Krupinski, E. A., Gandhi, K. & Hasegawa, M., 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 413-424 12 p., 45.

Research output: Contribution to journalConference article

Experimental task-based optimization of a four-camera variable-pinhole small-animal SPECT system

Hesterman, J. Y., Kupinski, M. A., Furenlid, L. R. & Wilson, D. W., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 300-309 10 p., 34.

Research output: Contribution to journalConference article

8 Scopus citations
2 Scopus citations

Grayscale resolution of LCD displays: 8 bits vs 11 bits

Roehrig, H., Fan, J., Krupinski, E. A. & Gandhi, K., Dec 1 2005, In : Proceedings of SPIE - The International Society for Optical Engineering. 5923, p. 1-9 9 p., 59230M.

Research output: Contribution to journalConference article

Increasing contrast resolution and decreasing spatial noise for liquid-crystal displays using digital dithering

Fan, J., Roehrig, H., Sundareshan, M. K., Dallas, W. J. & Krupinski, E., Aug 16 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5744, I, p. 251-262 12 p., 29.

Research output: Contribution to journalConference article

1 Scopus citations

Interpreting the ROC curve from the radiologist's point of view: The "Diagnostician Operating Choice" (DOC) curve

Beam, C. A., Conant, E. F., Krupinski, E. A., Kundel, H. L. & Sickles, E. A., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 8-14 7 p., 02.

Research output: Contribution to journalConference article

Invited paper: Medical imaging and the performance of softcopy displays

Roehrig, H., Fan, J., Krupinski, E. A. & Gandhi, K., Dec 1 2005, In : Digest of Technical Papers - SID International Symposium. 36, 1, p. 188-191 4 p., 13.1.

Research output: Contribution to journalConference article

2 Scopus citations

In-vivo multi-spectral confocal microscopy

Rouse, A. R., Udovich, J. A. & Gmitro, A. F., Jul 21 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5701, p. 73-84 12 p., 13.

Research output: Contribution to journalConference article

5 Scopus citations

Model prediction of just noticeable differences: Are the eyes attracted to the same areas?

Krupinski, E. A., Johnson, J., Roehrig, H., Nafziger, J. & Lubin, J., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 496-501 6 p., 54.

Research output: Contribution to journalConference article

Non-Gaussian noise in x-ray and γ-ray detectors

Chen, L. & Barrett, H. H., Aug 25 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5745, I, p. 366-376 11 p., 44.

Research output: Contribution to journalConference article

3 Scopus citations

Optical coherence tomography imaging and fluorescence spectroscopy of a novel rat model of ovarian cancer

Kanter, E., Walker, R., Marion, S., Hoyer, P. & Barton, J. K., Dec 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5861, p. 1-8 8 p., 58610P.

Research output: Contribution to journalConference article

1 Scopus citations

Probabilistic foundations of the MRMC method

Barrett, H. H., Kupinski, M. A. & Clarkson, E., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 21-31 11 p., 04.

Research output: Contribution to journalConference article

19 Scopus citations

Prototype AEGIS: A pixel-array readout circuit for gamma-ray imaging

Bradford Barber, H., Augustine, F. L., Furenlid, L., Ingram, C. M. & Grim, G. P., Dec 1 2005, In : Proceedings of SPIE - The International Society for Optical Engineering. 5923, p. 1-10 10 p., 59230H.

Research output: Contribution to journalConference article

The effect of spatial noise of LCD displays on the detection capabilities of the human observer

Gandhi, K., Fan, J., Roehrig, H., Sundareshan, M. K. & Krupinski, E., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 538-548 11 p., 59.

Research output: Contribution to journalConference article

7 Scopus citations

Use of multiple imaging modalities to detect ovarian cancer

Kanter, E., Walker, R., Marion, S., Hoyer, P. & Barton, J. K., Aug 16 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5686, p. 596-605 10 p., 120.

Research output: Contribution to journalConference article