Research Output 1982 2020

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2020

Early events in coccidioidomycosis

Donovan, F. M., Shubitz, L., Powell, D., Orbach, M., Frelinger, J. & Galgiani, J. N., Jan 2020, In : Clinical Microbiology Reviews. 33, 1, e00112-19.

Research output: Contribution to journalArticle

Coccidioidomycosis
Coccidioides
Host-Pathogen Interactions
Mycoses
Routine Diagnostic Tests

Leaf cuticular waxes of lettuce are associated with reduced attachment of the foodborne pathogen Salmonella spp. at harvest and after postharvest storage

Ku, K. M., Chiu, Y. C., Shen, C. & Jenks, M., Jan 2020, In : LWT. 117, 108657.

Research output: Contribution to journalArticle

Lettuce
epicuticular wax
Waxes
food pathogens
Salmonella

Removal of three proteinaceous antinutrients from soybean does not mitigate soybean-induced enteritis in Atlantic salmon (Salmo salar, L)

Krogdahl, Å., Kortner, T. M., Jaramillo-Torres, A., Gamil, A. A. A., Chikwati, E., Li, Y., Schmidt, M., Herman, E. M., Hymowitz, T., Teimouri, S. & Storebakken, T., Jan 1 2020, In : Aquaculture. 514, 734495.

Research output: Contribution to journalArticle

soy protein concentrate
enteritis
Salmo salar
soybean
soybeans
2019
Open Access
Pseudomonas syringae pv. pisi
Pseudomonas syringae
Horizontal Gene Transfer
gene transfer
Virulence Factors
4 Citations (Scopus)

A DNase from a Fungal Phytopathogen Is a Virulence Factor Likely Deployed as Counter Defense against Host-Secreted Extracellular DNA

Park, H. J., Wang, W., Curlango-Rivera, G., Xiong, Z., Lin, Z., Huskey, D. A., Hawes, M. C., VanEtten, H. D. & Turgeon, B. G., Mar 5 2019, In : mBio. 10, 2

Research output: Contribution to journalArticle

Open Access
Deoxyribonucleases
Virulence Factors
Virulence
DNA
Genes

Age-related variation in the oral microbiome of urban Cooper's hawks (Accipiter cooperii)

Taylor, M. J., Mannan, R. W., U'Ren, J. M., Garber, N. P., Gallery, R. E. & Arnold, A. E., Feb 21 2019, In : BMC Microbiology. 19, 1, 47.

Research output: Contribution to journalArticle

Open Access
Hawks
Microbiota
Raptors
Mouth
Birds

Agricultural plastics secure CEA ubiquitous applications in 21st century

Giacomelli, G. A., Jensen, M. H., Kacira, M. & Kubota, C., Jan 1 2019, In : Acta Horticulturae. 1252, p. 163-172 10 p.

Research output: Contribution to journalArticle

plastics
agriculture
greenhouses
quality of life
urban agriculture

Alternaria induces airway epithelial cytokine expression independent of protease-activated receptor

Daines, M., Zhu, L., Pereira, R., Zhou, X., Bondy, C., Pryor, B. M., Zhou, J. & Chen, Y., Jan 1 2019, (Accepted/In press) In : Respirology.

Research output: Contribution to journalArticle

Proteinase-Activated Receptors
Alternaria
PAR-2 Receptor
Cytokines
Asthma
2 Citations (Scopus)

A Novel, Highly Related Jumbo Family of Bacteriophages That Were Isolated Against Erwinia

Sharma, R., Pielstick, B. A., Bell, K. A., Nieman, T. B., Stubbs, O. A., Yeates, E. L., Baltrus, D. A. & Grose, J. H., Jul 23 2019, In : Frontiers in Microbiology. 10, 1533.

Research output: Contribution to journalArticle

Open Access
Erwinia
Bacteriophages
Erwinia amylovora
Mass Spectrometry
Pseudomonas Phages
3 Citations (Scopus)

Application of deoxygenation-aeration cycling to control the predatory bacterium Vampirovibrio chlorellavorus in Chlorella sorokiniana cultures

Attalah, S., Waller, P. M., Steichen, S., Gao, S., Brown, C. C., Ogden, K. L. & Brown, J. K., May 1 2019, In : Algal Research. 39, 101427.

Research output: Contribution to journalArticle

Chlorella sorokiniana
aeration
bacteria
coculture
anaerobic conditions
3 Citations (Scopus)

A swine model of soy protein-induced food allergenicity: Implications in human and swine nutrition

Radcliffe, J. S., Brito, L. F., Reddivari, L., Schmidt, M., Herman, E. M. & Schinckel, A. P., Jan 1 2019, In : Animal Frontiers. 9, 3, p. 52-59 8 p.

Research output: Contribution to journalArticle

Open Access
allergenicity
Soybean Proteins
soy protein
hypersensitivity
Hypersensitivity
2 Citations (Scopus)

BZU2/ZmMUTE controls symmetrical division of guard mother cell and specifies neighbor cell fate in maize

Wang, H., Guo, S., Qiao, X., Guo, J., Li, Z., Zhou, Y., Bai, S., Gao, Z., Wang, D., Wang, P., Galbraith, D. W. & Song, C. P., Aug 1 2019, In : PLoS genetics. 15, 8, p. e1008377

Research output: Contribution to journalArticle

Open Access
Zea mays
Stem Cells
polarization
maize
corn
1 Citation (Scopus)

Chickspress: a resource for chicken gene expression

McCarthy, F. M., Pendarvis, K., Cooksey, A. M., Gresham, C. R., Bomhoff, M., Davey, S., Lyons, E. H., Sonstegard, T. S., Bridges, S. M. & Burgess, S. C., Jan 1 2019, In : Database : the journal of biological databases and curation. 2019

Research output: Contribution to journalArticle

Open Access
Gene expression
Chickens
Genes
chickens
Gene Expression

Climate change perceptions and adaptive actions by pastoral community on the Tibetan plateau, China

Sharif, J., Rafiq, M. K., Rafiq, M. T., Aziz, R., Qayyum, A., Saleem, A. R., Nisa, W. U., Jenks, M. A. & Li, Y., Jan 1 2019, In : Applied Ecology and Environmental Research. 17, 4, p. 7987-8009 23 p.

Research output: Contribution to journalArticle

Open Access
plateaus
climate change
plateau
China
grasslands

Complete genome sequence of luteibacter pinisoli MAH-14

Baltrus, D. A., Clark, M., Inderbitzin, P., Pignatta, D., Knight-Connoni, V. & Arnold, A. E., Jul 18 2019, In : Microbiology Resource Announcements. 8, 29, e00774-19.

Research output: Contribution to journalArticle

Open Access
Gammaproteobacteria
Fungi
Genome

Coniochaeta endophytica sp. nov., a foliar endophyte associated with healthy photosynthetic tissue of Platycladus orientalis (Cupressaceae)

Harrington, A. H., Olmo-Ruiz, M. D., U'Ren, J. M., Garcia, K., Pignatta, D., Wespe, N., Sandberg, D. C., Huang, Y. L., Hoffman, M. T. & Arnold, A. E., Jun 1 2019, In : Plant and Fungal Systematics. 64, 1, p. 65-79 15 p.

Research output: Contribution to journalArticle

Open Access
Coniochaeta
Platycladus orientalis
Cupressaceae
endophytes
Coniochaetaceae

Cost minimization of deoxygenation for control of Vampirovibrio chlorellavorus in Chlorella sorokiniana cultures

Attalah, S., Waller, P. M., Steichen, S., Brown, C. C., Mehdipour, Y., Ogden, K. L. & Brown, J. K., Sep 1 2019, In : Algal Research. 42, 101615.

Research output: Contribution to journalArticle

Chlorella sorokiniana
raceways
nitrogen
algae
gases

Demographic expansion of the predominant Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) mitotypes associated with the cotton leaf curl virus epidemic in Pakistan

Paredes-Montero, J. R., Hameed, U., Zia-Ur-Rehman, M., Rasool, G., Haider, M. S., Herrmann, H. W. & Brown, J. K., May 1 2019, In : Annals of the Entomological Society of America. 112, 3, p. 265-280 16 p.

Research output: Contribution to journalArticle

Bemisia tabaci
Aleyrodidae
Pakistan
Hemiptera
demographic statistics

Diversity and distribution of microbial communities in floral nectar of two night-blooming plants of the Sonoran Desert

von Arx, M., Moore, A., Davidowitz, G. & Arnold, A. E., Jan 1 2019, In : PloS one. 14, 12, e0225309.

Research output: Contribution to journalArticle

Open Access
Plant Nectar
Sonoran Desert
nectar
microbial communities
Datura wrightii
1 Citation (Scopus)

Drought-tolerant barley: II. Root Tip characteristics in Emerging Roots

Carter, A. Y., Ottman, M. J., Curlango-Rivera, G., Huskey, D. A., D’Agostini, B. A. & Hawes, M. C., May 30 2019, In : Agronomy. 9, 5, 220.

Research output: Contribution to journalArticle

Open Access
root tips
barley
drought
mucilages
root hairs
1 Citation (Scopus)

Drought-tolerant barley: I. Field observations of growth and development

Carter, A. Y., Hawes, M. C. & Ottman, M. J., May 30 2019, In : Agronomy. 9, 5, 221.

Research output: Contribution to journalArticle

Open Access
growth and development
barley
drought
irrigation
water
2 Citations (Scopus)

First report of cotton leafroll dwarf virus associated with cotton blue disease symptoms in Alabama

Avelar, S., Schrimsher, D. W., Lawrence, K. & Brown, J. K., Mar 1 2019, In : Plant Disease. 103, 3, 1 p.

Research output: Contribution to journalArticle

cotton
Cotton leafroll dwarf virus

First report of cotton leafroll dwarf virus infecting cotton in Georgia, U.S.A.

Tabassum, A., Bag, S., Roberts, P., Suassuna, N., Chee, P., Whitaker, J. R., Conner, K. N., Brown, J., Nichols, R. L. & Kemerait, R. C., Jul 2019, In : Plant disease. 103, 7, 1 p.

Research output: Contribution to journalArticle

cotton
Cotton leafroll dwarf virus
1 Citation (Scopus)

Functional screening of genes from a halophyte wild rice relative Porteresia coarctata in Arabidopsis model identifies candidate genes involved in salt tolerance

Mangu, V. R., Ratnasekera, D., Yabes, J. C., Wing, R. A. & Baisakh, N., Jan 1 2019, In : Current Plant Biology. 100107.

Research output: Contribution to journalArticle

Open Access
Salt-Tolerance
wild rice
salt tolerance
Arabidopsis
Screening

Genome sequence of the model rice variety KitaakeX

Jain, R., Jenkins, J., Shu, S., Chern, M., Martin, J. A., Copetti, D., Duong, P. Q., Pham, N. T., Kudrna, D. A., Talag, J., Schackwitz, W. S., Lipzen, A. M., Dilworth, D., Bauer, D., Grimwood, J., Nelson, C. R., Xing, F., Xie, W., Barry, K. W., Wing, R. A. & 3 others, Schmutz, J., Li, G. & Ronald, P. C., Nov 27 2019, In : BMC genomics. 20, 1, 905.

Research output: Contribution to journalArticle

Genome
Genomics
Life Cycle Stages
Seeds
Oryza

Genome-wide association mapping of date palm fruit traits

Hazzouri, K. M., Gros-Balthazard, M., Flowers, J. M., Copetti, D., Lemansour, A., Lebrun, M., Masmoudi, K., Ferrand, S., Dhar, M. I., Fresquez, Z. A., Rosas, U., Zhang, J., Talag, J., Lee, S., Kudrna, D., Powell, R. F., Leitch, I. J., Krueger, R. R., Wing, R. A., Amiri, K. M. A. & 1 others, Purugganan, M. D., Dec 1 2019, In : Nature communications. 10, 1, 4680.

Research output: Contribution to journalArticle

Open Access
fruits
genome
Fruits
Genome-Wide Association Study
Fruit

Growth and demography of a declining, endangered cactus in the Sonoran Desert

McIntosh, M. E., Boyd, A. E., Arnold, A. E., Steidl, R. J. & McDade, L. A., Jan 1 2019, (Accepted/In press) In : Plant Species Biology.

Research output: Contribution to journalArticle

Sonoran Desert
cactus
demography
desert
drought
25 Citations (Scopus)

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)

Cossarizza, A., Chang, H. D., Radbruch, A., Acs, A., Adam, D., Adam-Klages, S., Agace, W. W., Aghaeepour, N., Akdis, M., Allez, M., Almeida, L. N., Alvisi, G., Anderson, G., Andrä, I., Annunziato, F., Anselmo, A., Bacher, P., Baldari, C. T., Bari, S., Barnaba, V. & 416 others, Barros-Martins, J., Battistini, L., Bauer, W., Baumgart, S., Baumgarth, N., Baumjohann, D., Baying, B., Bebawy, M., Becher, B., Beisker, W., Benes, V., Beyaert, R., Blanco, A., Boardman, D. A., Bogdan, C., Borger, J. G., Borsellino, G., Boulais, P. E., Bradford, J. A., Brenner, D., Brinkman, R. R., Brooks, A. E. S., Busch, D. H., Büscher, M., Bushnell, T. P., Calzetti, F., Cameron, G., Cammarata, I., Cao, X., Cardell, S. L., Casola, S., Cassatella, M. A., Cavani, A., Celada, A., Chatenoud, L., Chattopadhyay, P. K., Chow, S., Christakou, E., Čičin-Šain, L., Clerici, M., Colombo, F. S., Cook, L., Cooke, A., Cooper, A. M., Corbett, A. J., Cosma, A., Cosmi, L., Coulie, P. G., Cumano, A., Cvetkovic, L., Dang, V. D., Dang-Heine, C., Davey, M. S., Davies, D., De Biasi, S., Del Zotto, G., Dela Cruz, G. V., Delacher, M., Della Bella, S., Dellabona, P., Deniz, G., Dessing, M., Di Santo, J. P., Diefenbach, A., Dieli, F., Dolf, A., Dörner, T., Dress, R. J., Dudziak, D., Dustin, M., Dutertre, C. A., Ebner, F., Eckle, S. B. G., Edinger, M., Eede, P., Ehrhardt, G. R. A., Eich, M., Engel, P., Engelhardt, B., Erdei, A., Esser, C., Everts, B., Evrard, M., Falk, C. S., Fehniger, T. A., Felipo-Benavent, M., Ferry, H., Feuerer, M., Filby, A., Filkor, K., Fillatreau, S., Follo, M., Förster, I., Foster, J., Foulds, G. A., Frehse, B., Frenette, P. S., Frischbutter, S., Fritzsche, W., Galbraith, D. W., Gangaev, A., Garbi, N., Gaudilliere, B., Gazzinelli, R. T., Geginat, J., Gerner, W., Gherardin, N. A., Ghoreschi, K., Gibellini, L., Ginhoux, F., Goda, K., Godfrey, D. I., Goettlinger, C., González-Navajas, J. M., Goodyear, C. S., Gori, A., Grogan, J. L., Grummitt, D., Grützkau, A., Haftmann, C., Hahn, J., Hammad, H., Hämmerling, G., Hansmann, L., Hansson, G., Harpur, C. M., Hartmann, S., Hauser, A., Hauser, A. E., Haviland, D. L., Hedley, D., Hernández, D. C., Herrera, G., Herrmann, M., Hess, C., Höfer, T., Hoffmann, P., Hogquist, K., Holland, T., Höllt, T., Holmdahl, R., Hombrink, P., Houston, J. P., Hoyer, B. F., Huang, B., Huang, F. P., Huber, J. E., Huehn, J., Hundemer, M., Hunter, C. A., Hwang, W. Y. K., Iannone, A., Ingelfinger, F., Ivison, S. M., Jäck, H. M., Jani, P. K., Jávega, B., Jonjic, S., Kaiser, T., Kalina, T., Kamradt, T., Kaufmann, S. H. E., Keller, B., Ketelaars, S. L. C., Khalilnezhad, A., Khan, S., Kisielow, J., Klenerman, P., Knopf, J., Koay, H. F., Kobow, K., Kolls, J. K., Kong, W. T., Kopf, M., Korn, T., Kriegsmann, K., Kristyanto, H., Kroneis, T., Krueger, A., Kühne, J., Kukat, C., Kunkel, D., Kunze-Schumacher, H., Kurosaki, T., Kurts, C., Kvistborg, P., Kwok, I., Landry, J., Lantz, O., Lanuti, P., LaRosa, F., Lehuen, A., LeibundGut-Landmann, S., Leipold, M. D., Leung, L. Y. T., Levings, M. K., Lino, A. C., Liotta, F., Litwin, V., Liu, Y., Ljunggren, H. G., Lohoff, M., Lombardi, G., Lopez, L., López-Botet, M., Lovett-Racke, A. E., Lubberts, E., Luche, H., Ludewig, B., Lugli, E., Lunemann, S., Maecker, H. T., Maggi, L., Maguire, O., Mair, F., Mair, K. H., Mantovani, A., Manz, R. A., Marshall, A. J., Martínez-Romero, A., Martrus, G., Marventano, I., Maslinski, W., Matarese, G., Mattioli, A. V., Maueröder, C., Mazzoni, A., McCluskey, J., McGrath, M., McGuire, H. M., McInnes, I. B., Mei, H. E., Melchers, F., Melzer, S., Mielenz, D., Miller, S. D., Mills, K. H. G., Minderman, H., Mjösberg, J., Moore, J., Moran, B., Moretta, L., Mosmann, T. R., Müller, S., Multhoff, G., Muñoz, L. E., Münz, C., Nakayama, T., Nasi, M., Neumann, K., Ng, L. G., Niedobitek, A., Nourshargh, S., Núñez, G., O'Connor, J. E., Ochel, A., Oja, A., Ordonez, D., Orfao, A., Orlowski-Oliver, E., Ouyang, W., Oxenius, A., Palankar, R., Panse, I., Pattanapanyasat, K., Paulsen, M., Pavlinic, D., Penter, L., Peterson, P., Peth, C., Petriz, J., Piancone, F., Pickl, W. F., Piconese, S., Pinti, M., Pockley, A. G., Podolska, M. J., Poon, Z., Pracht, K., Prinz, I., Pucillo, C. E. M., Quataert, S. A., Quatrini, L., Quinn, K. M., Radbruch, H., Radstake, T. R. D. J., Rahmig, S., Rahn, H. P., Rajwa, B., Ravichandran, G., Raz, Y., Rebhahn, J. A., Recktenwald, D., Reimer, D., Reis e Sousa, C., Remmerswaal, E. B. M., Richter, L., Rico, L. G., Riddell, A., Rieger, A. M., Robinson, J. P., Romagnani, C., Rubartelli, A., Ruland, J., Saalmüller, A., Saeys, Y., Saito, T., Sakaguchi, S., Sala-de-Oyanguren, F., Samstag, Y., Sanderson, S., Sandrock, I., Santoni, A., Sanz, R. B., Saresella, M., Sautes-Fridman, C., Sawitzki, B., Schadt, L., Scheffold, A., Scherer, H. U., Schiemann, M., Schildberg, F. A., Schimisky, E., Schlitzer, A., Schlosser, J., Schmid, S., Schmitt, S., Schober, K., Schraivogel, D., Schuh, W., Schüler, T., Schulte, R., Schulz, A. R., Schulz, S. R., Scottá, C., Scott-Algara, D., Sester, D. P., Shankey, T. V., Silva-Santos, B., Simon, A. K., Sitnik, K. M., Sozzani, S., Speiser, D. E., Spidlen, J., Stahlberg, A., Stall, A. M., Stanley, N., Stark, R., Stehle, C., Steinmetz, T., Stockinger, H., Takahama, Y., Takeda, K., Tan, L., Tárnok, A., Tiegs, G., Toldi, G., Tornack, J., Traggiai, E., Trebak, M., Tree, T. I. M., Trotter, J., Trowsdale, J., Tsoumakidou, M., Ulrich, H., Urbanczyk, S., van de Veen, W., van den Broek, M., van der Pol, E., Van Gassen, S., Van Isterdael, G., van Lier, R. A. W., Veldhoen, M., Vento-Asturias, S., Vieira, P., Voehringer, D., Volk, H. D., von Borstel, A., von Volkmann, K., Waisman, A., Walker, R. V., Wallace, P. K., Wang, S. A., Wang, X. M., Ward, M. D., Ward-Hartstonge, K. A., Warnatz, K., Warnes, G., Warth, S., Waskow, C., Watson, J. V., Watzl, C., Wegener, L., Weisenburger, T., Wiedemann, A., Wienands, J., Wilharm, A., Wilkinson, R. J., Willimsky, G., Wing, J. B., Winkelmann, R., Winkler, T. H., Wirz, O. F., Wong, A., Wurst, P., Yang, J. H. M., Yang, J., Yazdanbakhsh, M., Yu, L., Yue, A., Zhang, H., Zhao, Y., Ziegler, S. M., Zielinski, C., Zimmermann, J. & Zychlinsky, A., Oct 1 2019, In : European Journal of Immunology. 49, 10, p. 1457-1973 517 p.

Research output: Contribution to journalArticle

Open Access
Flow Cytometry
Guidelines
Allergy and Immunology
Phenotype
Research
1 Citation (Scopus)

Host availability drives distributions of fungal endophytes in the imperilled boreal realm

U’Ren, J. M., Lutzoni, F., Miadlikowska, J., Zimmerman, N. B., Carbone, I., May, G. & Arnold, A. E., Oct 1 2019, In : Nature Ecology and Evolution. 3, 10, p. 1430-1437 8 p.

Research output: Contribution to journalArticle

endophyte
endophytes
biome
symbiont
lichen

Independent modulation of individual genomic component transcription and a cis-acting element related to high transcriptional activity in a multipartite DNA virus

Yu, N. T., Xie, H. M., Zhang, Y. L., Wang, J. H., Xiong, Z. & Liu, Z. X., Jul 11 2019, In : BMC genomics. 20, 1, 573.

Research output: Contribution to journalArticle

Open Access
Babuvirus
DNA Viruses
DNA
Viral Structures
Polymerase Chain Reaction
1 Citation (Scopus)

Integrating a newly developed BAC-based physical mapping resource for Lolium perenne with a genome-wide association study across a L. perenne European ecotype collection identifies genomic contexts associated with agriculturally important traits

Harper, J., De Vega, J., Swain, S., Heavens, D., Gasior, D., Thomas, A., Evans, C., Lovatt, A., Lister, S., Thorogood, D., Skøt, L., Hegarty, M., Blackmore, T., Kudrna, D. A., Byrne, S., Asp, T., Powell, W., Fernandez-Fuentes, N. & Armstead, I., Jun 24 2019, In : Annals of botany. 123, 6, p. 977-992 16 p.

Research output: Contribution to journalArticle

Open Access
bacterial artificial chromosomes
physical chromosome mapping
ecotypes
Lolium
Lolium perenne
1 Citation (Scopus)
diurnal variation
beetle
Coleoptera
fungi
resource

Just the Two of Us? A Family of Pseudomonas Megaplasmids Offers a Rare Glimpse into the Evolution of Large Mobile Elements

Smith, B. A., Leligdon, C. & Baltrus, D. A., Apr 1 2019, In : Genome biology and evolution. 11, 4, p. 1192-1206 15 p.

Research output: Contribution to journalArticle

Open Access
Pseudomonas
plasmids
Gene Order
gene
Genes
1 Citation (Scopus)

Linking duplication of a calcium sensor to salt tolerance in eutrema salsugineum

Monihan, S. M., Ryu, C. H., Magness, C. A. & Schumaker, K. S., Mar 1 2019, In : Plant physiology. 179, 3, p. 1176-1192 17 p.

Research output: Contribution to journalArticle

Open Access
Eutrema
Salt-Tolerance
salt tolerance
Salts
Calcium
2 Citations (Scopus)

Maternal small RNAs mediate spatial-temporal regulation of gene expression, imprinting, and seed development in Arabidopsis

Kirkbride, R. C., Lu, J., Zhang, C., Harris, R. A. M., Baulcombe, D. C. & Jeffrey Chen, Z., Feb 12 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 7, p. 2761-2766 6 p.

Research output: Contribution to journalArticle

Gene Expression Regulation
Arabidopsis
Small Interfering RNA
Seeds
Endosperm
1 Citation (Scopus)

Native and Invading Yellow Starthistle (Centaurea solstitialis) Microbiomes Differ in Composition and Diversity of Bacteria

Lu-Irving, P., Harenčár, J. G., Sounart, H., Welles, S. R., Swope, S. M., Baltrus, D. A. & Dlugosch, K. M., Mar 6 2019, In : mSphere. 4, 2

Research output: Contribution to journalArticle

Open Access
Centaurea
Microbiota
Bacteria
Microbial Interactions
Population

Norovirus and human adenovirus occurrence and diversity in recreational water in a karst aquifer in the Yucatan Peninsula, Mexico

Rosiles-González, G., Ávila-Torres, G., Moreno-Valenzuela, O. A., Cháidez-Quiroz, C., Hernández-Flores, C. I., Acosta-González, G., Brown, J. K., Betancourt, W. Q., Gerba, C. P. & Hernández-Zepeda, C., Oct 1 2019, In : Journal of Applied Microbiology. 127, 4, p. 1255-1269 15 p.

Research output: Contribution to journalArticle

Norovirus
Human Adenoviruses
Groundwater
Mexico
Genotype

Nuclear orthologs derived from whole genome sequencing indicate cryptic diversity in the Bemisia tabaci (Insecta: Aleyrodidae) complex of whiteflies

de Moya, R. S., Brown, J. K., Sweet, A. D., Kimberly, K. K., Paredes-Montero, J. R., Waterhouse, R. M. & Johnson, K. P., Sep 1 2019, In : Diversity. 11, 9, 151.

Research output: Contribution to journalArticle

Open Access
whitefly
Hemiptera
Bemisia tabaci
Aleyrodidae
Insecta
1 Citation (Scopus)

Optimizing Periplasmic Expression in Escherichia coli for the Production of Recombinant Proteins Tagged with the Small Metal-Binding Protein SmbP

Santos, B. D., Morones-Ramirez, J. R., Balderas-Renteria, I., Casillas-Vega, N. G., Galbraith, D. W. & Zarate, X., Jun 1 2019, In : Molecular Biotechnology. 61, 6, p. 451-460 10 p.

Research output: Contribution to journalArticle

Recombinant proteins
Recombinant Proteins
Escherichia coli
Carrier Proteins
Metals
32 Citations (Scopus)

Origin and evolution of the octoploid strawberry genome

Edger, P. P., Poorten, T. J., VanBuren, R., Hardigan, M. A., Colle, M., McKain, M. R., Smith, R. D., Teresi, S. J., Nelson, A. D. L., Wai, C. M., Alger, E. I., Bird, K. A., Yocca, A. E., Pumplin, N., Ou, S., Ben-Zvi, G., Brodt, A., Baruch, K., Swale, T., Shiue, L. & 9 others, Acharya, C. B., Cole, G. S., Mower, J. P., Childs, K. L., Jiang, N., Lyons, E. H., Freeling, M., Puzey, J. R. & Knapp, S. J., Jan 1 2019, In : Nature Genetics.

Research output: Contribution to journalArticle

Open Access
Fragaria
Genome
Diploidy
Chromosomes
DNA Shuffling
1 Citation (Scopus)

Progress in single-access information systems for wheat and rice crop improvement

Scheben, A., Chan, C. K. K., Mansueto, L., Mauleon, R., Larmande, P., Alexandrov, N., Wing, R. A., McNally, K. L., Quesneville, H. & Edwards, D., Mar 25 2019, In : Briefings in bioinformatics. 20, 2, p. 565-571 7 p.

Research output: Contribution to journalArticle

Information Systems
Triticum
Crops
Information systems
Informatics
7 Citations (Scopus)

Rapid evolution of protein diversity by de novo origination in Oryza

Zhang, L., Ren, Y., Yang, T., Li, G., Chen, J., Gschwend, A. R., Yu, Y., Hou, G., Zi, J., Zhou, R., Wen, B., Zhang, J. ., Chougule, K., Wang, M., Copetti, D., Peng, Z., Zhang, C., Zhang, Y., Ouyang, Y., Wing, R. A. & 2 others, Liu, S. & Long, M., Apr 1 2019, In : Nature Ecology and Evolution. 3, 4, p. 679-690 12 p.

Research output: Contribution to journalArticle

Open Access
Oryza
protein
gene
genes
proteins

Recessive Host Range Mutants and Unsusceptible Cells That Inactivate Virions without Genome Penetration: Ecological and Technical Implications

Roznowski, A. P., Young, R. J., Love, S. D., Andromita, A. A., Guzman, V. A., Wilch, M. H., Block, A., McGill, A., Lavelle, M., Romanova, A., Sekiguchi, A., Wang, M., Burch, A. D. & Fane, B. A., Feb 1 2019, In : Journal of virology. 93, 3

Research output: Contribution to journalArticle

Host Specificity
virion
host range
Virion
Genome
5 Citations (Scopus)

Structural variants in 3000 rice genomes

Fuentes, R. R., Chebotarov, D., Duitama, J., Smith, S., De la Hoz, J. F., Mohiyuddin, M., Wing, R. A., McNally, K. L., Tatarinova, T., Grigoriev, A., Mauleon, R. & Alexandrov, N., May 1 2019, In : Genome Research. 29, 5, p. 870-880 11 p.

Research output: Contribution to journalArticle

Open Access
Genome
5' Untranslated Regions
Genome-Wide Association Study
Computational Biology
Genes

Tail Wags the Dog? Functional Gene Classes Driving Genome-Wide GC Content in Plasmodium spp

Castillo, A. I., Nelson, A. D. L. & Lyons, E. H., Feb 1 2019, In : Genome biology and evolution. 11, 2, p. 497-507 11 p.

Research output: Contribution to journalArticle

Open Access
Plasmodium
cytosine
guanine
Base Composition
Tail
1 Citation (Scopus)

T-BAs version 2.1: Tree-based alignment selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees

Carbone, I., White, J. B., Miadlikowska, J., Elizabeth Arnold, A., Miller, M. A., Magain, N., U'Ren, J. M. & Lutzoni, F., Jul 18 2019, In : Microbiology Resource Announcements. 8, 29, e00328-19.

Research output: Contribution to journalArticle

Open Access
Sequence Alignment
Biodiversity
Licensure
Phylogeny
Metadata
1 Citation (Scopus)

The genome of Populus alba x Populus tremula var. glandulosa clone 84K

Qiu, D., Bai, S., Ma, J., Zhang, L., Shao, F., Zhang, K., Yang, Y., Sun, T., Huang, J., Zhou, Y., Galbraith, D. W., Wang, Z. & Sun, G., Oct 1 2019, In : DNA research : an international journal for rapid publication of reports on genes and genomes. 26, 5, p. 423-431 9 p.

Research output: Contribution to journalArticle

Open Access
Populus
Clone Cells
Genome
Chloroplast Genome
Republic of Korea

The infection of its insect vector by bacterial plant pathogen “Candidatus Liberibacter solanacearum” is associated with altered vector physiology

Molki, B., Ha, P. T., Cohen, A. L., Crowder, D. W., Gang, D. R., Omsland, A., Brown, J. K. & Beyenal, H., Oct 1 2019, In : Enzyme and Microbial Technology. 129, 109358.

Research output: Contribution to journalArticle

Insect Vectors
Hemiptera
Physiology
Pathogens
Infection
1 Citation (Scopus)

The Previously Unidentified, Divergent Badnavirus Species Cacao red vein-banding virus is Associated with Cacao Swollen Shoot Disease in Nigeria

Chingandu, N., Dongo, L., Gutierrez, O. A. & Brown, J. K., Jun 1 2019, In : Plant disease. 103, 6, p. 1302-1308 7 p.

Research output: Contribution to journalArticle

Badnavirus
plant veins
Nigeria
viruses
shoots

The relationship between cuticular lipids and associated gene expression in above ground organs of Thellungiella salsugineum (Pall.) Al-Shehbaz & Warwick

Xu, X., Xue, K., Tang, S., He, J., Song, B., Zhou, M., Zou, Y., Zhou, Y. & Jenks, M. A., Oct 2019, In : Plant Science. 287, 110200.

Research output: Contribution to journalArticle

cutin
Waxes
epicuticular wax
Lipids
Gene Expression