• 2964 Citations
  • 22 h-Index
20062020

Research output per year

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Research Output

2020

COVID-19 pandemic reveals the peril of ignoring metadata standards

Schriml, L. M., Chuvochina, M., Davies, N., Eloe-Fadrosh, E. A., Finn, R. D., Hugenholtz, P., Hunter, C. I., Hurwitz, B. L., Kyrpides, N. C., Meyer, F., Mizrachi, I. K., Sansone, S. A., Sutton, G., Tighe, S. & Walls, R., Dec 1 2020, In : Scientific Data. 7, 1, 188.

Research output: Contribution to journalComment/debate

Open Access

Metagenomic Next-Generation Sequencing in Clinical Microbiology

Watts, G. S. & Hurwitz, B. L., Apr 1 2020, In : Clinical Microbiology Newsletter. 42, 7, p. 53-59 7 p.

Research output: Contribution to journalArticle

2019

Erratum: IMicrobe: Tools and data-driven discovery platform for the microbiome sciences (GigaScience (2018) 7:12 (giy137) DOI: 10.1093/gigascience/giy137)

Youens-Clark, K., Bomhoff, M., Ponsero, A. J., Wood-Charlson, E. M., Lynch, J., Choi, I., Hartman, J. H. & Hurwitz, B. L., Aug 1 2019, In : GigaScience. 8, 8, giz097.

Research output: Contribution to journalComment/debate

Open Access

Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity

Watts, G. S., Thornton, J. E., Youens-Clark, K., Ponsero, A. J., Slepian, M. J., Menashi, E., Hu, C., Deng, W., Armstrong, D. G., Reed, S., Cranmer, L. D. & Hurwitz, B. L., Jan 1 2019, In : PLoS computational biology. 15, 11, e1006863.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

IMicrobe: Tools and data-driven discovery platform for the microbiome sciences

Youens-Clark, K., Bomhoff, M., Ponsero, A. J., Wood-Charlson, E. M., Lynch, J., Choi, I., Hartman, J. H. & Hurwitz, B. L., Jul 1 2019, In : GigaScience. 8, 7, giz083.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Minimum information about an uncultivated virus genome (MIUVIG)

Roux, S., Adriaenssens, E. M., Dutilh, B. E., Koonin, E. V., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Lavigne, R., Brister, J. R., Varsani, A., Amid, C., Aziz, R. K., Bordenstein, S. R., Bork, P., Breitbart, M., Cochrane, G. R., Daly, R. A., Desnues, C., Duhaime, M. B., Emerson, J. B. & 41 others, Enault, F., Fuhrman, J. A., Hingamp, P., Hugenholtz, P., Hurwitz, B. L., Ivanova, N. N., Labonté, J. M., Lee, K. B., Malmstrom, R. R., Martinez-Garcia, M., Mizrachi, I. K., Ogata, H., Páez-Espino, D., Petit, M. A., Putonti, C., Rattei, T., Reyes, A., Rodriguez-Valera, F., Rosario, K., Schriml, L., Schulz, F., Steward, G. F., Sullivan, M. B., Sunagawa, S., Suttle, C. A., Temperton, B., Tringe, S. G., Thurber, R. V., Webster, N. S., Whiteson, K. L., Wilhelm, S. W., Wommack, K. E., Woyke, T., Wrighton, K. C., Yilmaz, P., Yoshida, T., Young, M. J., Yutin, N., Allen, L. Z., Kyrpides, N. C. & Eloe-Fadrosh, E. A., Jan 1 2019, In : Nature biotechnology. 37, 1, p. 29-37 9 p.

Research output: Contribution to journalArticle

Open Access
37 Scopus citations

The promises and pitfalls of machine learning for detecting viruses in aquatic metagenomes

Ponsero, A. J. & Hurwitz, B. L., 2019, In : Frontiers in Microbiology. 10, MAR, 806.

Research output: Contribution to journalReview article

Open Access
3 Scopus citations
2018

Libra: Scalable k-mer-based tool for massive all-vs-All metagenome comparisons

Choi, I., Ponsero, A. J., Bomhoff, M., Youens-Clark, K., Hartman, J. H. & Hurwitz, B. L., Dec 28 2018, In : GigaScience. 8, 2

Research output: Contribution to journalArticle

5 Scopus citations

Libra: Improved partitioning strategies for massive comparative metagenomics analysis

Choi, I., Bomhoff, M., Ponsero, A. J., Hurwitz, B. L., Youens-Clark, K. & Hartman, J. H., Jun 11 2018, Proceedings of the 9th Workshop on Scientific Cloud Computing, ScienceCloud 2018 - Co-located with HPDC 2018. Association for Computing Machinery, Inc, a2. (Proceedings of the 9th Workshop on Scientific Cloud Computing, ScienceCloud 2018 - Co-located with HPDC 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Phage hunters: Computational strategies for finding phages in large-scale ‘omics datasets

Hurwitz, B. L., Ponsero, A., Thornton, J. & U'Ren, J. M., Jan 15 2018, In : Virus Research. 244, p. 110-115 6 p.

Research output: Contribution to journalReview article

13 Scopus citations
2017

16S rRNA gene sequencing on a benchtop sequencer: accuracy for identification of clinically important bacteria

Watts, G. S., Youens-Clark, K., Slepian, M. J., Wolk, D. M., Oshiro, M. M., Metzger, G. S., Dhingra, D., Cranmer, L. D. & Hurwitz, B. L., Dec 2017, In : Journal of Applied Microbiology. 123, 6, p. 1584-1596 13 p.

Research output: Contribution to journalArticle

6 Scopus citations

Genetic variation for domestication-related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) × ancestral rice, O. nivara, mapping population

Eizenga, G. C., Sanchez, P. L., Jackson, A. K., Edwards, J. D., Hurwitz, B. L., Wing, R. A. & Kudrna, D. A., Nov 1 2017, In : Molecular Breeding. 37, 11, 135.

Research output: Contribution to journalArticle

4 Scopus citations

IVirus: Facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure

Bolduc, B., Youens-Clark, K., Roux, S., Hurwitz, B. L. & Sullivan, M. B., Jan 1 2017, In : ISME Journal. 11, 1, p. 7-14 8 p.

Research output: Contribution to journalReview article

50 Scopus citations

Method-centered digital communities on protocols.io for fast-paced scientific innovation

Hurwitz, B. L., Kindler, L., Stoliartchouk, A. & Teytelman, L., 2017, In : F1000Research. 5, 2271.

Research output: Contribution to journalArticle

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

Genoscope Technical Team & Tara Oceans Consortium Coordinators, Aug 1 2017, In : Scientific Data. 4, 170093.

Research output: Contribution to journalArticle

39 Scopus citations
2016

Computational prospecting the great viral unknown

Hurwitz, B. L., U'Ren, J. M. & Youens-Clark, K., May 1 2016, In : FEMS Microbiology Letters. 363, 10, fnw077.

Research output: Contribution to journalShort survey

22 Scopus citations

Method-centered digital communities on protocols.io for fast-paced scientific innovation

Kindler, L., Stoliartchouk, A., Teytelman, L. & Hurwitz, B. L., 2016, In : F1000Research. 5, 2271.

Research output: Contribution to journalArticle

Protocols.io: Virtual Communities for Protocol Development and Discussion

Teytelman, L., Stoliartchouk, A., Kindler, L. & Hurwitz, B. L., Aug 22 2016, In : PLoS biology. 14, 8, e1002538.

Research output: Contribution to journalArticle

13 Scopus citations

Skin and soft tissue infections

Moffarah, A. S., Al Mohajer, M., Hurwitz, B. L. & Armstrong, D. G., 2016, In : Microbiology spectrum. 4, 4, DMIH2-0014-2015.

Research output: Contribution to journalArticle

5 Scopus citations

Viral metabolic reprogramming in marine ecosystems

Hurwitz, B. L. & U'Ren, J. M., Jun 1 2016, In : Current Opinion in Microbiology. 31, p. 161-168 8 p.

Research output: Contribution to journalArticle

48 Scopus citations
2015

Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome

Hurwitz, B. L., Brum, J. R. & Sullivan, M. B., Feb 22 2015, In : ISME Journal. 9, 2, p. 472-484 13 p.

Research output: Contribution to journalArticle

75 Scopus citations

Draft genome sequence of the ale-fermenting Saccharomyces cerevisiae strain GSY2239

U'Ren, J. M., Wisecaver, J. H., Paek, A. L., Dunn, B. L. & Hurwitz, B. L., 2015, In : Genome Announcements. 3, 4, e00776-15.

Research output: Contribution to journalArticle

3 Scopus citations

Microbiology of diabetic foot infections: From Louis Pasteur to 'crime scene investigation'

Spichler, A., Hurwitz, B. L., Armstrong, D. G. & Lipsky, B. A., Jan 7 2015, In : BMC Medicine. 13, 1, 2.

Research output: Contribution to journalArticle

58 Scopus citations

Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics

Brum, J. R., Hurwitz, B. L., Schofield, O., Ducklow, H. W. & Sullivan, M., Aug 21 2015, (Accepted/In press) In : ISME Journal.

Research output: Contribution to journalArticle

87 Scopus citations

Set Phages to Stun: Reducing the Virulence of Staphylococcus aureus in Diabetic Foot Ulcers

Armstrong, D. G., Hurwitz, B. L. & Lipsky, B. A., Aug 1 2015, In : Diabetes. 64, 8, p. 2701-2703 3 p.

Research output: Contribution to journalArticle

The quest for tissue repair's holy grail: The promise of wound diagnostics or just another fishing expedition?

Armstrong, D. G., Lew, E. J., Hurwitz, B. L. & Wild, T., Apr 1 2015, In : Wound Medicine. 8, p. 1-5 5 p.

Research output: Contribution to journalArticle

3 Scopus citations

VirSorter: Mining viral signal from microbial genomic data

Roux, S., Enault, F., Hurwitz, B. L. & Sullivan, M. B., Jan 1 2015, In : PeerJ. 2015, 5, e985.

Research output: Contribution to journalArticle

217 Scopus citations
2014
68 Scopus citations

Three-dimensional printing surgical instruments: Are we there yet?

Rankin, T. M., Giovinco, N. A., Cucher, D. J., Watts, G., Hurwitz, B. & Armstrong, D. G., Jun 15 2014, In : Journal of Surgical Research. 189, 2, p. 193-197 5 p.

Research output: Contribution to journalArticle

122 Scopus citations
2013

Evaluation of methods to concentrate and purify ocean virus communities through comparative, replicated metagenomics

Hurwitz, B. L., Deng, L., Poulos, B. T. & Sullivan, M. B., May 1 2013, In : Environmental Microbiology. 15, 5, p. 1428-1440 13 p.

Research output: Contribution to journalArticle

84 Scopus citations

Metabolic reprogramming by viruses in the sunlit and dark ocean

Hurwitz, B. L., Hallam, S. J. & Sullivan, M. B., Nov 7 2013, In : Genome biology. 14, 11, R123.

Research output: Contribution to journalArticle

81 Scopus citations
190 Scopus citations
2010

Dynamics of genome evolution in facultative symbionts of aphids

Degnan, P. H., Leonardo, T. E., Cass, B. N., Hurwitz, B., Stern, D., Gibbs, R. A., Richards, S. & Moran, N. A., Aug 1 2010, In : Environmental Microbiology. 12, 8, p. 2060-2069 10 p.

Research output: Contribution to journalArticle

55 Scopus citations

Genome sequence of the pea aphid Acyrthosiphon pisum

Richards, S., Gibbs, R. A., Gerardo, N. M., Moran, N., Nakabachi, A., Stern, D., Tagu, D., Wilson, A. C. C., Muzny, D., Kovar, C., Cree, A., Chacko, J., Chandrabose, M. N., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangian, S. N., Joshi, V. & 200 others, Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Nazareth, L. V., Chavez, D., Davis, C., Lee, S. L., Patel, B. M., Pu, L. L., Bell, S. N., Johnson, A. J., Vattathil, S., Williams, R. L., Shigenobu, S., Dang, P. M., Morioka, M., Fukatsu, T., Kudo, T., Miyagishima, S. Y., Jiang, H., Worley, K. C., Legeai, F., Gauthier, J. P., Collin, O., Zhang, L., Chen, H. C., Ermolaeva, O., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Maglott, D., Murphy, T., Pruitt, K., Sapojnikov, V., Souvorov, A., Thibaud-Nissen, F., Câmara, F., Guigó, R., Stanke, M., Solovyev, V., Kosarev, P., Gilbert, D., Gabaldón, T., Huerta-Cepas, J., Marcet-Houben, M., Pignatelli, M., Moya, A., Rispe, C., Ollivier, M., Quesneville, H., Permal, E., Llorens, C., Futami, R., Hedges, D., Robertson, H. M., Alioto, T., Mariotti, M., Nikoh, N., McCutcheon, J. P., Burke, G., Kamins, A., Latorre, A., Ashton, P., Calevro, F., Charles, H., Colella, S., Douglas, A. E., Jander, G., Jones, D. H., Febvay, G., Kamphuis, L. G., Kushlan, P. F., Macdonald, S., Ramsey, J., Schwartz, J., Seah, S., Thomas, G., Vellozo, A., Cass, B., Degnan, P., Hurwitz, B., Leonardo, T., Koga, R., Altincicek, B., Anselme, C., Atamian, H., Barribeau, S. M., De Vos, M., Duncan, E. J., Evans, J., Ghanim, M., Heddi, A., Kaloshian, I., Vincent-Monegat, C., Parker, B. J., Pérez-Brocal, V., Rahbé, Y., Spragg, C. J., Tamames, J., Tamarit, D., Tamborindeguy, C., Vilcinskas, A., Bickel, R. D., Brisson, J. A., Butts, T., Chang, C. C., Christiaens, O., Davis, G. K., Duncan, E., Ferrier, D., Iga, M., Janssen, R., Lu, H. L., McGregor, A., Miura, T., Smagghe, G., Smith, J., Van Der Zee, M., Velarde, R., Wilson, M., Dearden, P., Edwards, O. R., Gordon, K., Hilgarth, R. S., Rider, S. D., Srinivasan, D., Walsh, T. K., Ishikawa, A., Jaubert-Possamai, S., Fenton, B., Huang, W., Rizk, G., Lavenier, D., Nicolas, J., Smadja, C., Zhou, J. J., Vieira, F. G., He, X. L., Liu, R., Rozas, J., Field, L. M., Campbell, P., Carolan, J. C., Fitzroy, C. I. J., Reardon, K. T., Reeck, G. R., Singh, K., Wilkinson, T. L., Huybrechts, J., Abdel-Latief, M., Robichon, A., Veenstra, J. A., Hauser, F., Cazzamali, G., Schneider, M., Williamson, M., Stafflinger, E., Hansen, K. K., Grimmelikhuijzen, C. J. P., Price, D. R. G., Caillaud, M., Van Fleet, E., Ren, Q., Gatehouse, J. A., Brault, V., Monsion, B., Diaz, J., Hunnicutt, L., Ju, H. J., Pechuan, X., Aguilar, J., Cortés, T., Ortiz-Rivas, B., Martínez-Torres, D., Dombrovsky, A., Dale, R. P., Davies, T. G. E., Williamson, M. S., Jones, A., Sattelle, D., Williamson, S., Wolstenholme, A., Cottret, L., Sagot, M. F., Heckel, D. G. & Hunter, W., Feb 2010, In : PLoS biology. 8, 2, e1000313.

Research output: Contribution to journalArticle

670 Scopus citations

Phylogenomic analysis of BAC-end sequence libraries in Oryza (Poaceae)

Cranston, K. A., Hurwitz, B., Sanderson, M. J., Ware, D., Wing, R. A. & Stein, L., Jul 1 2010, In : Systematic Botany. 35, 3, p. 512-523 12 p.

Research output: Contribution to journalArticle

8 Scopus citations

Rapid genomic characterization of the genus Vitis

Myles, S., Chia, J. M., Hurwitz, B., Simon, C., Zhong, G. Y., Buckler, E. & Ware, D., Jan 13 2010, In : PloS one. 5, 1, e8219.

Research output: Contribution to journalArticle

150 Scopus citations

Rice structural variation: A comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza

Hurwitz, B. L., Kudrna, D., Yu, Y., Sebastian, A., Zuccolo, A., Jackson, S. A., Ware, D., Wing, R. A. & Stein, L., Sep 1 2010, In : Plant Journal. 63, 6, p. 990-1003 14 p.

Research output: Contribution to journalArticle

35 Scopus citations
2009

A first-generation haplotype map of maize

Gore, M. A., Chia, J. M., Elshire, R. J., Sun, Q., Ersoz, E. S., Hurwitz, B. L., Peiffer, J. A., McMullen, M. D., Grills, G. S., Ross-Ibarra, J., Ware, D. H. & Buckler, E. S., Nov 20 2009, In : Science. 326, 5956, p. 1115-1117 3 p.

Research output: Contribution to journalArticle

515 Scopus citations

Species trees from highly incongruent gene trees in rice

Cranston, K. A., Hurwitz, B., Ware, D., Stein, L. & Wing, R. A., Oct 1 2009, In : Systematic biology. 58, 5, p. 489-500 12 p.

Research output: Contribution to journalArticle

76 Scopus citations
2008

Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

Kim, H. R., Hurwitz, B., Yu, Y., Collura, K., Gill, N., SanMiguel, P., Mullikin, J. C., Maher, C., Nelson, W., Wissotski, M., Braidotti, M., Kudrna, D., Goicoechea, J. L., Stein, L., Ware, D., Jackson, S. A., Soderlund, C. & Wing, R. A., Feb 28 2008, In : Genome biology. 9, 2, R45.

Research output: Contribution to journalArticle

70 Scopus citations

Gramene: A growing plant comparative genomics resource

Liang, C., Jaiswal, P., Hebbard, C., Avraham, S., Buckler, E. S., Casstevens, T., Hurwitz, B., Mccouch, S., Ni, J., Pujar, A., Ravenscroft, D., Ren, L., Spooner, W., Tecle, I., Thomason, J., Tung, C. W., Wei, X., Yap, I., Youens-Clark, K., Ware, D. & 1 others, Stein, L., Jan 2008, In : Nucleic acids research. 36, SUPPL. 1, p. D947-D953

Research output: Contribution to journalArticle

128 Scopus citations
2007

The oryza map alignment project (OMAP): A new resource for comparative genome studies within oryza

Wing, R. A., Kim, H., Goicoechea, J. L., Yu, Y., Kudrna, D., Zuccolo, A., Ammiraju, J. S. S., Luo, M., Nelson, W., Ma, J., Sanmiguel, P., Hurwitz, B., Ware, D., Brar, D., Mackill, D., Soderlund, C., Stein, L. & Jackson, S., Jan 1 2007, Rice Functional Genomics: Challenges, Progress and Prospects. Springer New York, p. 395-409 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations
2006

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

Hass-Jacobus, B. L., Futrell-Griggs, M., Abernathy, B., Westerman, R., Goicoechea, J. L., Stein, J., Klein, P., Hurwitz, B., Zhou, B., Rakhshan, F., Sanyal, A., Gill, N., Lin, J. Y., Walling, J. G., Luo, M. Z., Ammiraju, J. S. S., Kudrna, D., Kim, H. R., Ware, D., Wing, R. A. & 2 others, San Miguel, P. & Jackson, S. A., Aug 8 2006, In : BMC genomics. 7, 199.

Research output: Contribution to journalArticle

13 Scopus citations