• 2522 Citations
  • 20 h-Index
1987 …2020

Research output per year

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Research Output

2020

Combined Detection and Segmentation of Cell Nuclei in Microscopy Images Using Deep Learning

Ram, S., Nguyen, V. T., Limesand, K. H. & Rodriguez, J. J., Mar 2020, 2020 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2020 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 26-29 4 p. 9094614. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation; vol. 2020-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Deep Learning Classification of Chest X-Ray Images

Majdi, M. S., Salman, K. N., Morris, M. F., Merchant, N. C. & Rodriguez, J. J., Mar 2020, 2020 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2020 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 116-119 4 p. 9094612. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation; vol. 2020-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Image inpainting using nonlocal texture matching and nonlinear filtering

Ding, D., Ram, S. & Rodriguez, J. J., Apr 2019, In : IEEE Transactions on Image Processing. 28, 4, p. 1705-1719 15 p., 8531678.

Research output: Contribution to journalArticle

17 Scopus citations

Racioethnic differences in the biomechanical response of the lamina cribrosa

Behkam, R., Kollech, H. G., Jana, A., Hill, A., Danford, F., Howerton, S., Ram, S., Rodríguez, J. J., Utzinger, U., Girkin, C. A. & Vande Geest, J. P., Apr 1 2019, In : Acta Biomaterialia. 88, p. 131-140 10 p.

Research output: Contribution to journalArticle

2 Scopus citations
2018
1 Scopus citations

A ground-truth fusion method for image segmentation evaluation

Malladi, S. R. S. P., Ram, S. & Rodriguez, J. J., Sep 21 2018, 2018 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-April. p. 137-140 4 p. 8470317

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Automated High-Throughput Damage Scoring of Zebrafish Lateral Line Hair Cells After Ototoxin Exposure

Philip, R. C., Rodriguez, J. J., Niihori, M., Francis, R. H., Mudery, J. A., Caskey, J. S., Krupinski, E. A. & Jacob, A., Apr 1 2018, In : Zebrafish. 15, 2, p. 145-155 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Automatic classification of dual-modalilty, smartphone-based oral dysplasia and malignancy images using deep learning

Song, B., Sunny, S., Uthoff, R. D., Patrick, S., Suresh, A., Kolur, T., Keerthi, G., Anbarani, A., Wilder-Smith, P., Kuriakose, M. A., Birur, P., Rodriguez, J. J. & Liang, R., Nov 1 2018, In : Biomedical Optics Express. 9, 11, p. 5318-5329 12 p., #336298.

Research output: Contribution to journalArticle

5 Scopus citations

Classification of primary cilia in microscopy images using convolutional neural random forests

Ram, S., Majdi, M. S., Rodriguez, J. J., Gao, Y. & Brooks, H. L., Sep 21 2018, 2018 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 89-92 4 p. 8470320. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Drive-net: Convolutional network for driver distraction detection

Majdi, M. S., Ram, S., Gill, J. T. & Rodriguez, J. J., Sep 21 2018, 2018 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 69-72 4 p. 8470309. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Perceptually aware image inpainting

Ding, D., Ram, S. & Rodriguez, J. J., Nov 1 2018, In : Pattern Recognition. 83, p. 174-184 11 p.

Research output: Contribution to journalArticle

12 Scopus citations

Performance of supervised classifiers for damage scoring of zebrafish neuromasts

Philip, R. C., Malladi, S. R. S. P., Niihori, M., Jacob, A. & Rodriguez, J. J., Sep 21 2018, 2018 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-April. p. 113-116 4 p. 8470377

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Three-Dimensional Segmentation of the Ex-Vivo Anterior Lamina Cribrosa from Second-Harmonic Imaging Microscopy

Ram, S., Danford, F., Howerton, S., Rodríguez, J. J. & Geest, J. P. V., Jul 2018, In : IEEE Transactions on Biomedical Engineering. 65, 7, p. 1617-1629 13 p.

Research output: Contribution to journalArticle

4 Scopus citations
2017

A Fully Automated High-Throughput Zebrafish Behavioral Ototoxicity Assay

Todd, D. W., Philip, R. C., Niihori, M., Ringle, R. A., Coyle, K. R., Zehri, S. F., Zabala, L., Mudery, J. A., Francis, R. H., Rodriguez, J. J. & Jacob, A., Aug 1 2017, In : Zebrafish. 14, 4, p. 331-342 12 p.

Research output: Contribution to journalArticle

7 Scopus citations

Segmentation of the right ventricle in four chamber cine cardiac MR images using polar dynamic programming

Rosado-Toro, J. A., Abidov, A., Altbach, M. I., Oliva, I. B., Rodriguez, J. J. & Avery, R. J., Dec 2017, In : Computerized Medical Imaging and Graphics. 62, p. 15-25 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

Single-image full-focus reconstruction using depth-based deconvolution

Salahieh, B., Rodriguez, J. J., Stetson, S. & Liang, R., Apr 1 2017, In : Optical Engineering. 56, 4, 041302.

Research output: Contribution to journalArticle

1 Scopus citations
2016

A maximum-likelihood method to estimate a single ADC value of lesions using diffusion MRI

Jha, A. K., Rodriguez, J. J. & Stopeck, A. T., 2016, (Accepted/In press) In : Magnetic Resonance in Medicine.

Research output: Contribution to journalArticle

4 Scopus citations

A performance comparison of automatic detection schemes in wide-area aerial imagery

Gao, X., Ram, S. & Rodriguez, J. J., Apr 25 2016, 2016 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 125-128 4 p. 7459191. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation; vol. 2016-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Dynamic Programming Using Polar Variance for Image Segmentation

Rosado-Toro, J. A., Altbach, M. I. & Rodriguez, J. J., Dec 1 2016, In : IEEE Transactions on Image Processing. 25, 12, p. 5857-5866 10 p., 7585054.

Research output: Contribution to journalArticle

3 Scopus citations

Image super-resolution using graph regularized block sparse representation

Ram, S. & Rodriguez, J. J., Apr 25 2016, 2016 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-April. p. 69-72 4 p. 7459177

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Size-Invariant Detection of Cell Nuclei in Microscopy Images

Ram, S. & Rodriguez, J. J., Jul 1 2016, In : IEEE Transactions on Medical Imaging. 35, 7, p. 1753-1764 12 p., 7404018.

Research output: Contribution to journalArticle

10 Scopus citations

Vehicle detection in aerial images using multiscale structure enhancement and symmetry

Ram, S. & Rodriguez, J. J., Aug 3 2016, 2016 IEEE International Conference on Image Processing, ICIP 2016 - Proceedings. IEEE Computer Society, Vol. 2016-August. p. 3817-3821 5 p. 7533074

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations
2015

A new contrast-enhancing feature for cloud detection in ground-based sky images

Jayadevan, V. T., Rodriguez, J. J. & Cronin, A. D., Jan 1 2015, In : Journal of Atmospheric and Oceanic Technology. 32, 2, p. 209-219 11 p.

Research output: Contribution to journalArticle

14 Scopus citations

Automated Breast Segmentation of Fat and Water MR Images Using Dynamic Programming

Rosado-Toro, J. A., Barr, T., Galons, J. P., Marron, M. T., Stopeck, A., Thomson, C., Thompson, P., Carroll, D., Wolf, E., Altbach, M. I. & Rodríguez, J. J., Feb 1 2015, In : Academic radiology. 22, 2, p. 139-148 10 p.

Research output: Contribution to journalArticle

27 Scopus citations

Diffusion MRI with Semi-Automated Segmentation Can Serve as a Restricted Predictive Biomarker of the Therapeutic Response of Liver Metastasis

Stephen, R. M., Jha, A. K., Roe, D. J., Trouard, T. P., Galons, J. P., Kupinski, M. A., Frey, G., Cui, H., Squire, S., Pagel, M. M., Rodriguez, J. J., Gillies, R. J. & Stopeck, A. T., Dec 1 2015, In : Magnetic Resonance Imaging. 33, 10, p. 1267-1273 7 p.

Research output: Contribution to journalArticle

8 Scopus citations

Direct superresolution for realistic image reconstruction

Salahieh, B., Rodriguez, J. J. & Liang, R., Oct 5 2015, In : Optics Express. 23, 20, p. 26124-26138 15 p.

Research output: Contribution to journalArticle

1 Scopus citations

Direct superresolution technique for solving a miniature multi-shift imaging system

Salahieh, B., Rodriguez, J. J. & Liang, R., 2015, Adaptive Optics: Analysis, Methods and Systems, AO 2015. Optical Society of America (OSA), p. 289 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transfer function analysis in epi-illumination Fourier ptychography

Pacheco, S., Salahieh, B., Milster, T. D., Rodriguez, J. J. & Liang, R., Nov 15 2015, In : Optics Letters. 40, 22, p. 5343-5346 4 p.

Research output: Contribution to journalArticle

22 Scopus citations
2014

A comparison of tracking algorithm performance for objects in wide area imagery

Philip, R. C., Ram, S., Gao, X. & Rodríguez, J. J., Jan 1 2014, 2014 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2014 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 109-112 4 p. 6806041. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Multi-polarization fringe projection imaging for high dynamic range objects

Salahieh, B., Chen, Z., Rodriguez, J. J. & Liang, R., Apr 21 2014, In : Optics Express. 22, 8, p. 10064-10071 8 p.

Research output: Contribution to journalArticle

50 Scopus citations

Non-rigid registration using gradient of self-similarity response

Huang, J. L. & Rodriguez, J. J., Nov 2014, In : Image and Vision Computing. 32, 11, p. 825-834 10 p.

Research output: Contribution to journalArticle

Single image super-resolution using dictionary-based local regression

Ram, S. & Rodríguez, J. J., Jan 1 2014, 2014 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2014 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 121-124 4 p. 6806044. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Superpixels using morphology for rock image segmentation

Malladi, S. R. S. P., Ram, S. & Rodríguez, J. J., Jan 1 2014, 2014 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2014 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 145-148 4 p. 6806050. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations
2013

Automated segmentation of breast fat-water MR images using empirical analysis

Rosado-Toro, J. A., Barr, T., Galons, J. P., Marron, M. T., Stopeck, A., Thomson, C., Altbach, M. I. & Rodriguez, J. J., Oct 18 2013, 2013 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2013 - Proceedings. p. 1018-1022 5 p. 6637803. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Random walker watersheds: A new image segmentation approach

Ram, S. & Rodriguez, J. J., Oct 18 2013, 2013 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2013 - Proceedings. p. 1473-1477 5 p. 6637896. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Symmetry-based detection of nuclei in microscopy images

Ram, S. & Rodriguez, J. J., Oct 18 2013, 2013 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2013 - Proceedings. p. 1128-1132 5 p. 6637826. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations
2012

A maximum-likelihood approach for ADC estimation of lesions in visceral organs

Jha, A. K. & Rodríguez, J. J., Jul 2 2012, 2012 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2012, Proceedings. p. 21-24 4 p. 6202443. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Analysis of second-harmonic-generation microscopy in a mouse model of ovarian carcinoma

Watson, J. M., Rice, P. F., Marion, S. L., Brewer, M. A., Davis, J. R., Rodriguez, J. J., Utzinger, U., Hoyer, P. B. & Bartona, J. K., Jul 1 2012, In : Journal of biomedical optics. 17, 7, 076002.

Research output: Contribution to journalArticle

20 Scopus citations

Cell splitting using dynamic programming

Rosado-Toro, J. A. & Rodriguez, J. J., Jul 2 2012, 2012 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2012, Proceedings. p. 33-36 4 p. 6202446. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Forecasting solar power intermittency using ground-based cloud imaging

Jayadevan, V. T., Rodriguez, J. J., Lonij, V. P. A. & Cronin, A. D., Dec 31 2012, World Renewable Energy Forum, WREF 2012, Including World Renewable Energy Congress XII and Colorado Renewable Energy Society (CRES) Annual Conference. p. 2100-2106 7 p. (World Renewable Energy Forum, WREF 2012, Including World Renewable Energy Congress XII and Colorado Renewable Energy Society (CRES) Annual Conferen; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Forecasts of PV power output using power measurements of 80 residential PV installs

Lonij, V. P. A., Jayadevan, V. T., Brooks, A. E., Rodriguez, J. J., Koch, K., Leuthold, M. & Cronin, A. D., Nov 26 2012, Program - 38th IEEE Photovoltaic Specialists Conference, PVSC 2012. p. 3300-3305 6 p. 6318280. (Conference Record of the IEEE Photovoltaic Specialists Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

21 Scopus citations

Segmentation and detection of fluorescent 3D spots

Ram, S., Rodríguez, J. J. & Bosco, G., Mar 1 2012, In : Cytometry Part A. 81 A, 3, p. 198-212 15 p.

Research output: Contribution to journalArticle

17 Scopus citations

Size-invariant cell nucleus segmentation in 3-D microscopy

Ram, S., Rodríguez, J. J. & Bosco, G., Jul 2 2012, 2012 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2012, Proceedings. p. 37-40 4 p. 6202447. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Task-based evaluation of segmentation algorithms for diffusion-weighted MRI without using a gold standard

Jha, A. K., Kupinski, M. A., Rodríguez, J. J., Stephen, R. M. & Stopeck, A. T., Jul 7 2012, In : Physics in medicine and biology. 57, 13, p. 4425-4446 22 p.

Research output: Contribution to journalArticle

12 Scopus citations
2011

Automated registration of sequential breath-hold dynamic contrast-enhanced MR images: A comparison of three techniques

Rajaraman, S., Rodriguez, J. J., Graff, C., Altbach, M. I., Dragovich, T., Sirlin, C. B., Korn, R. L. & Raghunand, N., Jun 1 2011, In : Magnetic Resonance Imaging. 29, 5, p. 668-682 15 p.

Research output: Contribution to journalArticle

17 Scopus citations
2010

A clustering algorithm for liver lesion segmentation of diffusion-weighted MR images

Jha, A. K., Rodríguez, J. J., Stephen, R. M. & Stopeck, A. T., Jul 26 2010, 2010 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2010 - Proceedings. p. 93-96 4 p. 5483911. (Proceedings of the IEEE Southwest Symposium on Image Analysis and Interpretation).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

16 Scopus citations

ADC estimation in multi-scan DWMRI

Jha, A. K., Kupinski, M. A., Rodríguez, J. J., Stephen, R. M. & Stopeck, A. T., Dec 1 2010, Digital Image Processing and Analysis, DIPA 2010. (Optics InfoBase Conference Papers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution