• 3598 Citations
  • 20 h-Index
20032019
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Research Output 2003 2019

  • 3598 Citations
  • 20 h-Index
  • 44 Article
  • 2 Letter
  • 1 Comment/debate
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Article
2019
4 Citations (Scopus)

Rapid evolution of protein diversity by de novo origination in Oryza

Zhang, L., Ren, Y., Yang, T., Li, G., Chen, J., Gschwend, A. R., Yu, Y., Hou, G., Zi, J., Zhou, R., Wen, B., Zhang, J. ., Chougule, K., Wang, M., Copetti, D., Peng, Z., Zhang, C., Zhang, Y., Ouyang, Y., Wing, R. A. & 2 others, Liu, S. & Long, M., Apr 1 2019, In : Nature Ecology and Evolution. 3, 4, p. 679-690 12 p.

Research output: Contribution to journalArticle

Open Access
Oryza
protein
gene
genes
proteins
2018
11 Citations (Scopus)

ABC transporter mis-splicing associated with resistance to Bt toxin Cry2Ab in laboratory- and field-selected pink bollworm

Mathew, L. G., Ponnuraj, J., Mallappa, B., Chowdary, L. R., Zhang, J. ., Tay, W. T., Walsh, T. K., Gordon, K. H. J., Heckel, D. G., Downes, S., Carriere, Y., Li, X., Tabashnik, B. E. & Fabrick, J. A., Dec 1 2018, In : Scientific Reports. 8, 1, 13531.

Research output: Contribution to journalArticle

Pectinophora gossypiella
ABC transporters
Bacillus thuringiensis
toxins
pest resistance
1 Citation (Scopus)

CRISPR-PLANT v2: an online resource for highly specific guide RNA spacers based on improved off-target analysis

Minkenberg, B., Zhang, J. ., Xie, K. & Yang, Y., Jan 1 2018, (Accepted/In press) In : Plant Biotechnology Journal.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
RNA
Gene Editing
1 Citation (Scopus)

Development of species diagnostic SNP markers for quality control genotyping in four rice (Oryza L.) species

Ndjiondjop, M. N., Semagn, K., Zhang, J. ., Gouda, A. C., Kpeki, S. B., Goungoulou, A., Wambugu, P., Dramé, K. N., Bimpong, I. K. & Zhao, D., Nov 1 2018, In : Molecular Breeding. 38, 11, 131.

Research output: Contribution to journalArticle

Oryza
Quality Control
genotyping
single nucleotide polymorphism
Single Nucleotide Polymorphism
11 Citations (Scopus)

Genetic control of seed shattering during African rice domestication

Lv, S., Wu, W., Wang, M., Meyer, R. S., Ndjiondjop, M. N., Tan, L., Zhou, H., Zhang, J. ., Fu, Y., Cai, H., Sun, C., Wing, R. A. & Zhu, Z., Jun 1 2018, In : Nature Plants. 4, 6, p. 331-337 7 p.

Research output: Contribution to journalArticle

seed shattering
Oryza glaberrima
domestication
seed dispersal
agroecology
49 Citations (Scopus)

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

Stein, J. C., Yu, Y., Copetti, D., Zwickl, D. J., Zhang, L., Zhang, C., Chougule, K., Gao, D., Iwata, A., Goicoechea, J. L., Wei, S., Wang, J., Liao, Y., Wang, M., Jacquemin, J., Becker, C., Kudrna, D. A., Zhang, J. ., Londono, C. E. M., Song, X. & 45 others, Lee, S., Sanchez, P., Zuccolo, A., Ammiraju, J. S. S., Talag, J., Danowitz, A., Rivera, L. F., Gschwend, A. R., Noutsos, C., Wu, C. C., Kao, S. M., Zeng, J. W., Wei, F. J., Zhao, Q., Feng, Q., El Baidouri, M., Carpentier, M. C., Lasserre, E., Cooke, R., Rosa Farias, D. D., Da Maia, L. C., Dos Santos, R. S., Nyberg, K. G., McNally, K. L., Mauleon, R., Alexandrov, N., Schmutz, J., Flowers, D., Fan, C., Weigel, D., Jena, K. K., Wicker, T., Chen, M., Han, B., Henry, R., Hsing, Y. I. C., Kurata, N., De Oliveira, A. C., Panaud, O., Jackson, S. A., Machado, C. A., Sanderson, M., Long, M., Ware, D. & Wing, R. A., Feb 1 2018, In : Nature Genetics. 50, 2, p. 285-296 12 p.

Research output: Contribution to journalArticle

Genome
Disease Resistance
Molecular Evolution
Phylogeny
Starvation
94 Citations (Scopus)

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

Wang, W., Mauleon, R., Hu, Z., Chebotarov, D., Tai, S., Wu, Z., Li, M., Zheng, T., Fuentes, R. R., Zhang, F., Mansueto, L., Copetti, D., Sanciangco, M., Palis, K. C., Xu, J., Sun, C., Fu, B., Zhang, H., Gao, Y., Zhao, X. & 51 others, Shen, F., Cui, X., Yu, H., Li, Z., Chen, M., Detras, J., Zhou, Y., Zhang, X., Zhao, Y., Kudrna, D. A., Wang, C., Li, R., Jia, B., Lu, J., He, X., Dong, Z., Xu, J., Li, Y., Wang, M., Shi, J., Li, J., Zhang, D., Lee, S., Hu, W., Poliakov, A., Dubchak, I., Ulat, V. J., Borja, F. N., Mendoza, J. R., Ali, J., Gao, Q., Niu, Y., Yue, Z., Naredo, M. E. B., Talag, J., Wang, X., Li, J., Fang, X., Yin, Y., Glaszmann, J. C., Zhang, J. ., Li, J., Hamilton, R. S., Wing, R. A., Ruan, J., Zhang, G., Wei, C., Alexandrov, N., McNally, K. L., Li, Z. & Leung, H., May 3 2018, In : Nature. 557, 7703, p. 43-49 7 p.

Research output: Contribution to journalArticle

Genome
Geographic Locations
Genomics
Population
Breeding
2017
27 Citations (Scopus)

Aflatoxin-free transgenic maize using host-induced gene silencing

Thakare, D., Zhang, J. ., Wing, R. A., Cotty, P. J. & Schmidt, M., Mar 1 2017, In : Science advances. 3, 3, e1602382.

Research output: Contribution to journalArticle

Aflatoxins
Gene Silencing
Zea mays
Aspergillus
RNA Interference
35 Citations (Scopus)

A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication

Wu, W., Liu, X., Wang, M., Meyer, R. S., Luo, X., Ndjiondjop, M. N., Tan, L., Zhang, J. ., Wu, J., Cai, H., Sun, C., Wang, X., Wing, R. A. & Zhu, Z., May 8 2017, In : Nature Plants. 3, 17064.

Research output: Contribution to journalArticle

seed shattering
Oryza glaberrima
domestication
single nucleotide polymorphism
Oryza barthii
6 Citations (Scopus)

Sequencing and comparative analyses of Aegilops tauschii chromosome arm 3DS reveal rapid evolution of Triticeae genomes

Xie, J., Huo, N., Zhou, S., Wang, Y., Guo, G., Deal, K. R., Ouyang, S., Liang, Y., Wang, Z., Xiao, L., Zhu, T., Hu, T., Tiwari, V., Zhang, J. ., Li, H., Ni, Z., Yao, Y., Peng, H., Zhang, S., Anderson, O. D. & 6 others, McGuire, P. E., Dvorak, J., Luo, M. C., Liu, Z., Gu, Y. Q. & Sun, Q., Jan 20 2017, In : Journal of Genetics and Genomics. 44, 1, p. 51-61 11 p.

Research output: Contribution to journalArticle

Triticum
Chromosomes
Genome
Polyploidy
Brachypodium
25 Citations (Scopus)

Young inversion with multiple linked QTLs under selection in a hybrid zone

Lee, C. R., Wang, B., Mojica, J. P., Mandáková, T., Prasad, K. V. S. K., Goicoechea, J. L., Perera, N., Hellsten, U., Hundley, H. N., Johnson, J., Grimwood, J., Barry, K., Fairclough, T., Jenkins, J. W., Yu, Y., Kudrna, D. A., Zhang, J. ., Talag, J., Golser, W., Ghattas, K. & 6 others, Schranz, M. E., Wing, R. A., Lysak, M. A., Schmutz, J., Rokhsar, D. S. & Mitchell-Olds, T., Apr 3 2017, In : Nature Ecology and Evolution. 1, 5, 0119.

Research output: Contribution to journalArticle

hybrid zone
quantitative trait loci
Boechera stricta
glaciation
chromosome mapping
2016
6 Citations (Scopus)

Data Descriptor: Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

Zhang, J. ., Chen, L. L., Sun, S., Kudrna, D. A., Copetti, D., Li, W., Mu, T., Jiao, W. B., Xing, F., Lee, S., Talag, J., Song, J. M., Du, B., Xie, W., Luo, M., Maldonado, C. E., Goicoechea, J. L., Xiong, L., Wu, C., Xing, Y. & 10 others, Zhou, D. X., Yu, S., Zhao, Y., Wang, G., Yu, Y., Luo, Y., Hurtado, B. E. P., Danowitz, A., Wing, R. A. & Zhang, Q., Sep 13 2016, In : Scientific data. 3, 160076.

Research output: Contribution to journalArticle

Sequencing
Descriptors
Genome
Genes
Technology
10 Citations (Scopus)

DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements

Wang, J., Yu, Y., Tao, F., Zhang, J. ., Copetti, D., Kudrna, D. A., Talag, J., Lee, S., Wing, R. A. & Fan, C., May 6 2016, In : Genome Biology. 17, 1, 92.

Research output: Contribution to journalArticle

DNA Transposable Elements
methylation
DNA methylation
DNA Methylation
transposons
52 Citations (Scopus)

Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63

Zhang, J. ., Chen, L. L., Xing, F., Kudrna, D. A., Yao, W., Copetti, D., Mu, T., Li, W., Song, J. M., Xie, W., Lee, S., Talag, J., Shao, L., An, Y., Zhang, C. L., Ouyang, Y., Sun, S., Jiao, W. B., Lv, F., Du, B. & 17 others, Luo, M., Maldonado, C. E., Goicoechea, J. L., Xiong, L., Wu, C., Xing, Y., Zhou, D. X., Yu, S., Zhao, Y., Wang, G., Yu, Y., Luo, Y., Zhou, Z. W., Hurtado, B. E. P., Danowitz, A., Wing, R. A. & Zhang, Q., Aug 30 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 35, p. E5163-E5171

Research output: Contribution to journalArticle

Genome
Genomic Segmental Duplications
Genes
Genome Size
Oryza
6 Citations (Scopus)

Genome puzzle master (GPM): An integrated pipeline for building and editing pseudomolecules from fragmented sequences

Zhang, J. ., Kudrna, D. A., Mu, T., Li, W., Copetti, D., Yu, Y., Goicoechea, J. L., Lei, Y. & Wing, R. A., Oct 15 2016, In : Bioinformatics. 32, 20, p. 3058-3064 7 p.

Research output: Contribution to journalArticle

Genome
Pipelines
Genes
Clinical Laboratory Information Systems
Information Management
2015
20 Citations (Scopus)

RiTE database: A resource database for genus-wide rice genomics and evolutionary biology

Copetti, D., Zhang, J. ., El Baidouri, M., Gao, D., Wang, J., Barghini, E., Cossu, R. M., Angelova, A., Maldonado L., C. E., Roffler, S., Ohyanagi, H., Wicker, T., Fan, C., Zuccolo, A., Chen, M., Costa de Oliveira, A., Han, B., Henry, R., Hsing, Y. I., Kurata, N. & 4 others, Wang, W., Jackson, S. A., Panaud, O. & Wing, R. A., Jul 22 2015, In : BMC Genomics. 16, 1, 538.

Research output: Contribution to journalArticle

Genomics
Genome
Databases
Molecular Sequence Annotation
DNA Transposable Elements
2014
1 Citation (Scopus)

First report of Sclerotinia minor on Brassica rapa subsp. pekinensis in Central China

Lyu, A., Zhang, J. ., Yang, L. & Li, G. Q., 2014, In : Plant Disease. 98, 7, p. 992 1 p.

Research output: Contribution to journalArticle

Brassica rapa subsp. pekinensis
Sclerotinia minor
China
108 Citations (Scopus)

Genome-wide prediction of highly specific guide RNA spacers for CRISPR-Cas9-mediated genome editing in model plants and major crops

Xie, K., Zhang, J. . & Yang, Y., 2014, In : Molecular Plant. 7, 5, p. 923-926 4 p.

Research output: Contribution to journalArticle

CRISPR-Cas Systems
Clustered Regularly Interspaced Short Palindromic Repeats
Guide RNA
Agricultural Crops
Plant Genome
6 Citations (Scopus)

Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping

Wang, X., Kudrna, D. A., Pan, Y., Wang, H., Liu, L., Lin, H., Zhang, J. ., Song, X., Goicoechea, J. L., Wing, R. A., Zhang, Q. & Luo, M., 2014, In : Genetics. 196, 4, p. 937-949 13 p.

Research output: Contribution to journalArticle

Bacterial Artificial Chromosomes
Genome
Gene Ontology
Genomics
Microsatellite Repeats
2012
6 Citations (Scopus)

Cloning and characterization of paleoAP3-like MADS-box gene in London plane tree

Li, Z., Liu, G., Zhang, J. ., Lu, S., Yi, S. & Bao, M., Sep 2012, In : Biologia Plantarum. 56, 3, p. 585-589 5 p.

Research output: Contribution to journalArticle

Platanus acerifolia
molecular cloning
male flowers
Trochodendron aralioides
flower primordia
20 Citations (Scopus)

OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice

Gao, X., Chen, Z., Zhang, J. ., Li, X., Chen, G., Li, X. & Wu, C., Apr 2012, In : Planta. 235, 4, p. 713-727 15 p.

Research output: Contribution to journalArticle

Classical Lissencephalies and Subcortical Band Heterotopias
internodes
sequence homology
rice
Pollen
2011
13 Citations (Scopus)

Conservation and purifying selection of transcribed genes located in a rice centromere

Fan, C., Walling, J. G., Zhang, J. ., Hirsch, C. D., Jiang, J. & Wing, R. A., Aug 2011, In : Plant Cell. 23, 8, p. 2821-2830 10 p.

Research output: Contribution to journalArticle

Centromere
centromeres
rice
Genes
genes
11 Citations (Scopus)

The FLOWERING LOCUS T orthologous gene of Platanus acerifolia is expressed as alternatively spliced forms with distinct spatial and temporal patterns

Zhang, J. ., Liu, G., Guo, C., He, Y., Li, Z., Ning, G., Shi, X. & Bao, M., Sep 2011, In : Plant Biology. 13, 5, p. 809-820 12 p.

Research output: Contribution to journalArticle

Platanus acerifolia
alternative splicing
dormancy
apical dominance
gene
2010
17 Citations (Scopus)

Cloning of porcine chemerin, ChemR23 and GPR1 and their involvement in regulation of lipogenesis

Huang, J., Zhang, J. ., Lei, T., Chen, X., Zhang, Y., Zhou, L., Yu, A., Chen, Z., Zhou, R. & Yang, Z., Jul 2010, In : BMB Reports. 43, 7, p. 491-498 8 p.

Research output: Contribution to journalArticle

Lipogenesis
Cloning
Adipose Tissue
Organism Cloning
Peroxisome Proliferator-Activated Receptors

Erratum: Arachidonic acid induces acetyl-CoA carboxylase 1 expression via activation of CREB1 (Endocrine DOI: 10.1007/s12020-009-9241-8)

Peng, Y., Lei, T., Yuan, J., Chen, X., Long, Q., Zhang, J. ., Lei, P., Feng, B. & Yang, Z., Feb 2010, In : Endocrine. 37, 1, p. 239 1 p.

Research output: Contribution to journalArticle

Acetyl-CoA Carboxylase
Arachidonic Acid
14 Citations (Scopus)

Porcine KLF gene family: Structure, mapping, and phylogenetic analysis

Chen, Z., Lei, T., Chen, X., Zhang, J. ., Yu, A., Long, Q., Long, H., Jin, D., Gan, L. & Yang, Z., Feb 2010, In : Genomics. 95, 2, p. 111-119 9 p.

Research output: Contribution to journalArticle

Kruppel-Like Transcription Factors
Swine
Genes
Zinc Fingers
Chromosomes, Human, Pair 2
22 Citations (Scopus)

Resistin up-regulates COX-2 expression via TAK1-IKK-NF-κB signaling pathway

Zhang, J. ., Lei, T., Chen, X., Peng, Y., Long, H., Zhou, L., Huang, J., Chen, Z., Long, Q. & Yang, Z., Feb 2010, In : Inflammation. 33, 1, p. 25-33 9 p.

Research output: Contribution to journalArticle

Resistin
Up-Regulation
Macrophages
MAP Kinase Kinase Kinases
Transforming Growth Factors
2009
34 Citations (Scopus)

Detailed analysis of a contiguous 22-Mb region of the maize genome

Wei, F., Stein, J. C., Liang, C., Zhang, J. ., Fulton, R. S., Baucom, R. S., De Paoli, E., Zhou, S., Yang, L., Han, Y., Pasternak, S., Narechania, A., Zhang, L., Yeh, C. T., Ying, K., Nagel, D. H., Collura, K., Kudrna, D. A., Currie, J., Lin, J. & 35 others, Kim, H., Angelova, A., Scara, G., Wissotski, M., Golser, W., Courtney, L., Kruchowski, S., Graves, T. A., Rock, S. M., Adams, S., Fulton, L. A., Fronick, C., Courtney, W., Kramer, M., Spiegel, L., Nascimento, L., Kalyanaraman, A., Chaparro, C., Deragon, J. M., Miguel, P. S., Jiang, N., Wessler, S. R., Green, P. J., Yu, Y., Schwartz, D. C., Meyers, B. C., Bennetzen, J. L., Martienssen, R. A., McCombie, W. R., Aluru, S., Clifton, S. W., Schnable, P. S., Ware, D., Wilson, R. K. & Wing, R. A., Nov 2009, In : PLoS Genetics. 5, 11, e1000728.

Research output: Contribution to journalArticle

Zea mays
DNA Transposable Elements
genome
maize
Genome
12 Citations (Scopus)

Molecular cloning, chromosomal location and expression pattern of porcine CIDEa and CIDEc

Li, Y. H., Lei, T., Chen, X. D., Xia, T., Peng, Y., Long, Q. Q., Zhang, J. ., Feng, S. Q., Zhou, L. & Yang, Z. Q., Mar 2009, In : Molecular Biology Reports. 36, 3, p. 575-582 8 p.

Research output: Contribution to journalArticle

Molecular Cloning
Swine
White Adipose Tissue
Messenger RNA
Apoptosis Inducing Factor
13 Citations (Scopus)

Single feature polymorphisms between two rice cultivars detected using a median polish method

Xie, W., Chen, Y., Zhou, G., Wang, L., Zhang, C., Zhang, J. ., Xiao, J., Zhu, T. & Zhang, Q., Jun 2009, In : Theoretical And Applied Genetics. 119, 1, p. 151-164 14 p.

Research output: Contribution to journalArticle

Industrial Oils
genetic polymorphism
Single Nucleotide Polymorphism
rice
cultivars
2239 Citations (Scopus)

The B73 maize genome: Complexity, diversity, and dynamics

Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J. ., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B., Rock, S. M. & 137 others, Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D. A., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., McMahan, L., Van Buren, P., Vaughn, M. W., Ying, K., Yeh, C. T., Emrich, S. J., Jia, Y., Kalyanaraman, A., Hsia, A. P., Barbazuk, W. B., Baucom, R. S., Brutnell, T. P., Carpita, N. C., Chaparro, C., Chia, J. M., Deragon, J. M., Estill, J. C., Fu, Y., Jeddeloh, J. A., Han, Y., Lee, H., Li, P., Lisch, D. R., Liu, S., Liu, Z., Nagel, D. H., McCann, M. C., Sanmiguel, P., Myers, A. M., Nettleton, D., Nguyen, J., Penning, B. W., Ponnala, L., Schneider, K. L., Schwartz, D. C., Sharma, A., Soderlund, C., Springer, N. M., Sun, Q., Wang, H., Waterman, M., Westerman, R., Wolfgruber, T. K., Yang, L., Yu, Y., Zhang, L., Zhou, S., Zhu, Q., Bennetzen, J. L., Dawe, R. K., Jiang, J., Jiang, N., Presting, G. G., Wessler, S. R., Aluru, S., Martienssen, R. A., Clifton, S. W., McCombie, W. R., Wing, R. A. & Wilson, R. K., Nov 20 2009, In : Science. 326, 5956, p. 1112-1115 4 p.

Research output: Contribution to journalArticle

Zea mays
Genome
Biological Models
DNA Transposable Elements
Centromere
76 Citations (Scopus)

The physical and genetic framework of the maize B73 genome

Wei, F., Zhang, J. ., Zhou, S., He, R., Schaeffer, M., Collura, K., Kudrna, D. A., Faga, B. P., Wissotski, M., Golser, W., Rock, S. M., Graves, T. A., Fulton, R. S., Coe, E., Schnable, P. S., Schwartz, D. C., Ware, D., Clifton, S. W., Wilson, R. K. & Wing, R. A., Nov 2009, In : PLoS Genetics. 5, 11, e1000715.

Research output: Contribution to journalArticle

Zea mays
genome
physical chromosome mapping
maize
Genome
2008
1 Citation (Scopus)

First report of onion bulb rot caused by Botrytis aclada in China

Zhang, J. ., Zou, Q., Li, G. Q., Jiang, D. H. & Huang, H. C., Jul 2008, In : Plant Disease. 92, 7, p. 1133 1 p.

Research output: Contribution to journalArticle

Botrytis allii
onions
bulbs
China
2007
79 Citations (Scopus)

Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant library

Zhang, J., Guo, D., Chang, Y., You, C., Li, X., Dai, X., Weng, Q., Zhang, J. ., Chen, G., Li, X., Liu, H., Han, B., Zhang, Q. & Wu, C., Mar 2007, In : Plant Journal. 49, 5, p. 947-959 13 p.

Research output: Contribution to journalArticle

enhancer elements
Genome
nucleotide sequences
mutants
genome
2006
29 Citations (Scopus)

Establishment of a patterned GAL4-VP16 transactivation system for discovering gene function in rice

Liang, D., Wu, C., Li, C., Xu, C., Zhang, J. ., Kilian, A., Li, X., Zhang, Q. & Xiong, L., Jun 2006, In : Plant Journal. 46, 6, p. 1059-1072 14 p.

Research output: Contribution to journalArticle

transcriptional activation
Transcriptional Activation
rice
Genes
genes
120 Citations (Scopus)

Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray

Lian, X., Wang, S., Zhang, J. ., Feng, Q., Zhang, L., Fan, D., Li, X., Yuan, D., Han, B. & Zhang, Q., Mar 2006, In : Plant Molecular Biology. 60, 5, p. 617-631 15 p.

Research output: Contribution to journalArticle

Microarrays
Oligonucleotide Array Sequence Analysis
Nitrogen
Complementary DNA
Genes
80 Citations (Scopus)

Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs

Huang, Y., Zhang, L., Zhang, J. ., Yuan, D., Xu, C., Li, X., Zhou, D., Wang, S. & Zhang, Q., Nov 2006, In : Plant Molecular Biology. 62, 4-5, p. 579-591 13 p.

Research output: Contribution to journalArticle

Hybrid Vigor
Expressed Sequence Tags
Microarray Analysis
Microarrays
expressed sequence tags
6 Citations (Scopus)

Identification of novel stress-responsive transcription factor genes in rice by cDNA array analysis

Wu, C. Q., Hu, H. H., Zeng, Y., Liang, D. C., Xie, K. B., Zhang, J. ., Chu, Z. H. & Xiong, L. Z., Oct 2006, In : Journal of Integrative Plant Biology. 48, 10, p. 1216-1224 9 p.

Research output: Contribution to journalArticle

Oligonucleotide Array Sequence Analysis
Transcription Factors
transcription factors
Complementary DNA
Genes
66 Citations (Scopus)

Pyramiding of Xa7 and Xa21 for the improvement of disease resistance to bacterial blight in hybrid rice

Zhang, J. ., Li, X., Jiang, G., Xu, Y. & He, Y., Dec 2006, In : Plant Breeding. 125, 6, p. 600-605 6 p.

Research output: Contribution to journalArticle

Disease Resistance
blight
disease resistance
rice
restorer lines
142 Citations (Scopus)

RMD: a rice mutant database for functional analysis of the rice genome.

Zhang, J. ., Li, C., Wu, C., Xiong, L., Chen, G., Zhang, Q. & Wang, S., Jan 1 2006, In : Nucleic Acids Research. 34, Database issue

Research output: Contribution to journalArticle

Genome
Databases
Regulator Genes
Reporter Genes
Seeds
2005
37 Citations (Scopus)

Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63

Zhang, J. ., Feng, Q., Jin, C., Qiu, D., Zhang, L., Xie, K., Yuan, D., Han, B., Zhang, Q. & Wang, S., Jun 2005, In : Plant Journal. 42, 5, p. 772-780 9 p.

Research output: Contribution to journalArticle

Expressed Sequence Tags
expressed sequence tags
Gene Library
cDNA libraries
rice
16 Citations (Scopus)

Isolation and annotation of 10828 putative full length cDNAs from indica rice

Xie, K., Zhang, J. ., Xiang, Y., Feng, Q., Han, B., Chu, Z., Wang, S., Zhang, Q. & Xiong, L., 2005, In : Science in China, Series C: Life Sciences. 48, 5, p. 445-451 7 p.

Research output: Contribution to journalArticle

genomics
rice
genome
Complementary DNA
homology
2004
43 Citations (Scopus)

Genome-wide analysis of defense-responsive genes in bacterial blight resistance of rice mediated by the recessive R gene xa13

Chu, Z., Ouyang, Y., Zhang, J. ., Yang, H. & Wang, S., Feb 2004, In : Molecular Genetics and Genomics. 271, 1, p. 111-120 10 p.

Research output: Contribution to journalArticle

vpr Genes
Recessive Genes
Bacterial Genes
Genome
Expressed Sequence Tags
2003
8 Citations (Scopus)

A new method for EST clustering

Zhang, L. D., Yuan, D. J., Zhang, J. ., Wang, S. P. & Zhang, Q. F., Feb 1 2003, In : Acta Genetica Sinica. 30, 2, p. 147-153 7 p.

Research output: Contribution to journalArticle

Expressed Sequence Tags
Cluster Analysis
Arabidopsis
Genes
Information Centers