Matthew Hj Cordes

  • 1005 Citations
  • 18 h-Index
1985 …2019

Research output per year

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Research Output

  • 1005 Citations
  • 18 h-Index
  • 41 Article
  • 1 Letter
  • 1 Short survey
  • 1 Review article
2019

A shift in aggregation avoidance strategy marks a long-term direction to protein evolution

Foy, S. G., Wilson, B. A., Bertram, J., Cordes, M. H. J. & Masel, J., Apr 2019, In : Genetics. 211, 4, p. 1345-1355 11 p.

Research output: Contribution to journalArticle

2 Scopus citations
Open Access
1 Scopus citations

Increased sequence hydrophobicity reduces conformational specificity: A mutational case study of the Arc repressor protein

Stewart, K. L., Rathore, D., Dodds, E. D. & Cordes, M. H. J., Jan 2019, In : Proteins: Structure, Function and Bioinformatics. 87, 1, p. 23-33 11 p.

Research output: Contribution to journalArticle

2018

Evolutionary dynamics of origin and loss in the deep history of phospholipase D toxin genes

Cordes, M. H. J. & Binford, G. J., Dec 18 2018, In : BMC Evolutionary Biology. 18, 1, 194.

Research output: Contribution to journalArticle

1 Scopus citations

Multistep mutational transformation of a protein fold through structural intermediates

Kumirov, V. K., Dykstra, E. M., Hall, B. M., Anderson, W. J., Szyszka, T. N. & Cordes, M. H., Oct 1 2018, In : Protein Science. 27, 10, p. 1767-1779 13 p.

Research output: Contribution to journalArticle

Sexually dimorphic venom proteins in long-jawed orb-weaving spiders (Tetragnatha) comprise novel gene families

Zobel-Thropp, P. A., Bulger, E. A., Cordes, M. H. J., Binford, G. J., Gillespie, R. G. & Brewer, M. S., 2018, In : PeerJ. 2018, 6, e4691.

Research output: Contribution to journalArticle

4 Scopus citations
2017

Foldability of a Natural De Novo Evolved Protein

Bungard, D., Copple, J. S., Yan, J., Chhun, J. J., Kumirov, V. K., Foy, S. G., Masel, J., Wysocki, V. H. & Cordes, M. H., 2017, (Accepted/In press) In : Structure.

Research output: Contribution to journalArticle

6 Scopus citations
2015

Spider, bacterial and fungal phospholipase D toxins make cyclic phosphate products

Lajoie, D. M. & Cordes, M. H., Dec 15 2015, In : Toxicon. 108, p. 176-180 5 p.

Research output: Contribution to journalArticle

6 Scopus citations

Studying protein fold evolution with hybrids of differently folded homologs

Eaton, K. V., Anderson, W. J., Dubrava, M. S., Kumirov, V. K., Dykstra, E. M. & Cordes, M. H. J., 2015, In : Protein Engineering, Design and Selection. 28, 8, p. 241-250 10 p.

Research output: Contribution to journalArticle

6 Scopus citations

The recent de Novo origin of protein C-termini

Andreatta, M. E., Levine, J. A., Foy, S. G., Guzman, L. D., Kosinski, L. J., Cordes, M. H. J. & Masel, J., 2015, In : Genome biology and evolution. 7, 6, p. 1686-1701 16 p.

Research output: Contribution to journalArticle

8 Scopus citations

Variable substrate preference among phospholipase D toxins from sicariid spiders

Lajoie, D. M., Roberts, S. A., Zobel-Thropp, P. A., Delahaye, J. L., Bandarian, V., Binford, G. J. & Cordes, M. H. J., Apr 24 2015, In : Journal of Biological Chemistry. 290, 17, p. 10994-11007 14 p.

Research output: Contribution to journalArticle

15 Scopus citations
2013

A polymetamorphic protein

Stewart, K. L., Dodds, E. D., Wysocki, V. H. & Cordes, M. H. J., May 2013, In : Protein Science. 22, 5, p. 641-649 9 p.

Research output: Contribution to journalArticle

5 Scopus citations

A role for indels in the evolution of Cro protein folds

Stewart, K. L., Nelson, M. R., Eaton, K. V., Anderson, W. J. & Cordes, M. H. J., Nov 2013, In : Proteins: Structure, Function and Bioinformatics. 81, 11, p. 1988-1996 9 p.

Research output: Contribution to journalArticle

4 Scopus citations

Phospholipase D Toxins of Brown Spider Venom Convert Lysophosphatidylcholine and Sphingomyelin to Cyclic Phosphates

Lajoie, D. M., Zobel-Thropp, P. A., Kumirov, V. K., Bandarian, V., Binford, G. J. & Cordes, M. H. J., Aug 29 2013, In : PloS one. 8, 8, e72372.

Research output: Contribution to journalArticle

24 Scopus citations
2012

The porous borders of the protein world

Cordes, M. H. J. & Stewart, K. L., Feb 8 2012, In : Structure. 20, 2, p. 199-200 2 p.

Research output: Contribution to journalShort survey

5 Scopus citations
2011

Determinants of gas-phase disassembly behavior in homodimeric protein complexes with related yet divergent structures

Dodds, E. D., Blackwell, A. E., Jones, C. M., Holso, K. L., O'Brien, D. J., Cordes, M. H. J. & Wysocki, V. H., May 15 2011, In : Analytical chemistry. 83, 10, p. 3881-3889 9 p.

Research output: Contribution to journalArticle

24 Scopus citations

Evolutionary bridges to new protein folds: Design of C-terminal Cro protein chameleon sequences

Anderson, W. J., Van Dorn, L. O., Ingram, W. M. & Cordes, M. H. J., Sep 1 2011, In : Protein Engineering, Design and Selection. 24, 9, p. 765-771 7 p.

Research output: Contribution to journalArticle

12 Scopus citations

Measuring 1HN temperature coefficients in invisible protein states by relaxation dispersion NMR spectroscopy

Bouvignies, G., Vallurupalli, P., Cordes, M. H. J., Hansen, D. F. & Kay, L. E., May 1 2011, In : Journal of Biomolecular NMR. 50, 1, p. 13-18 6 p.

Research output: Contribution to journalArticle

11 Scopus citations

Reengineering Cro protein functional specificity with an evolutionary code

Hall, B. M., Vaughn, E. E., Begaye, A. R. & Cordes, M. H. J., Nov 11 2011, In : Journal of Molecular Biology. 413, 5, p. 914-928 15 p.

Research output: Contribution to journalArticle

4 Scopus citations
2010

A simple method for measuring signs of 1HN chemical shift differences between ground and excited protein states

Bouvignies, G., Korzhnev, D. M., Neudecker, P., Hansen, D. F., Cordes, M. H. J. & Kay, L. E., Jun 1 2010, In : Journal of Biomolecular NMR. 47, 2, p. 135-141 7 p.

Research output: Contribution to journalArticle

18 Scopus citations
2009

Molecular evolution, functional variation, and proposed nomenclature of the gene family that includes sphingomyelinase D in sicariid spider venoms

Binford, G. J., Bodner, M. R., Cordes, M. H. J., Baldwin, K. L., Rynerson, M. R., Burns, S. N. & Zobel-Thropp, P. A., Mar 1 2009, In : Molecular biology and evolution. 26, 3, p. 547-566 20 p.

Research output: Contribution to journalArticle

76 Scopus citations
2008

N15 Cro and λ Cro: Orthologous DNA-binding domains with completely different but equally effective homodimer interfaces

Dubrava, M. S., Ingram, W. M., Roberts, S. A., Weichsel, A., Montfort, W. R. & Cordes, M. H. J., May 1 2008, In : Protein Science. 17, 5, p. 803-812 10 p.

Research output: Contribution to journalArticle

12 Scopus citations

Structural features and the persistence of acquired proteins

Narra, H. P., Cordes, M. H. J. & Ochman, H., Nov 1 2008, In : Proteomics. 8, 22, p. 4772-4781 10 p.

Research output: Contribution to journalArticle

20 Scopus citations
68 Scopus citations
11 Scopus citations
2007

Conservation and diversity in the immunity regions of wild phages with the immunity specificity of phage λ

Degnan, P. H., Michalowski, C. B., Babić, A. C., Cordes, M. H. J. & Little, J. W., Apr 1 2007, In : Molecular Microbiology. 64, 1, p. 232-244 13 p.

Research output: Contribution to journalArticle

16 Scopus citations
2006

A trade between similar but nonequivalent intrasubunit and intersubunit contacts in Cro dimer evolution

Newlove, T., Atkinson, K. R., Van Dorn, L. O. & Cordes, M. H. J., May 23 2006, In : Biochemistry. 45, 20, p. 6379-6391 13 p.

Research output: Contribution to journalArticle

10 Scopus citations
9 Scopus citations

Lateral gene transfer of a dermonecrotic toxin between spiders and bacteria

Cordes, M. H. J. & Binford, G. J., Feb 1 2006, In : Bioinformatics. 22, 3, p. 264-268 5 p.

Research output: Contribution to journalArticle

24 Scopus citations

Relationship between sequence determinants of stability for two natural homologous proteins with different folds

Van Dorn, L. O., Newlove, T., Chang, S., Ingram, W. M. & Cordes, M. H. J., Sep 5 2006, In : Biochemistry. 45, 35, p. 10542-10553 12 p.

Research output: Contribution to journalArticle

22 Scopus citations
2005

Networking at the Protein Society Symposium

McKnight, C. J. & Cordes, M. H. J., Oct 2005, In : Nature chemical biology. 1, 5, p. 239-242 4 p.

Research output: Contribution to journalLetter

Sequence correlations between Cro recognition helices and cognate O R consensus half-sites suggest conserved rules of protein-DNA pecognition

Hall, B. M., LeFevre, K. R. & Cordes, M. H. J., Jul 22 2005, In : Journal of Molecular Biology. 350, 4, p. 667-681 15 p.

Research output: Contribution to journalArticle

11 Scopus citations

Sequence determinants of a conformational switch in a protein structure

Anderson, T. A., Cordes, M. H. J. & Sauer, R. T., Dec 20 2005, In : Proceedings of the National Academy of Sciences of the United States of America. 102, 51, p. 18344-18349 6 p.

Research output: Contribution to journalArticle

24 Scopus citations

Sphingomyelinase D from venoms of Loxosceles spiders: Evolutionary insights from cDNA sequences and gene structure

Binford, G. J., Cordes, M. H. J. & Wells, M. A., Apr 2005, In : Toxicon. 45, 5, p. 547-560 14 p.

Research output: Contribution to journalArticle

49 Scopus citations
2004

Secondary structure switching in Cro protein evolution

Newlove, T., Konieczka, J. H. & Cordes, M. H. J., Apr 1 2004, In : Structure. 12, 4, p. 569-581 13 p.

Research output: Contribution to journalArticle

34 Scopus citations
2003

Retroevolution of λ Cro toward a stable monomer

LeFevre, K. R. & Cordes, M. H. J., Mar 4 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, 5, p. 2345-2350 6 p.

Research output: Contribution to journalArticle

39 Scopus citations

Solution structure of switch Arc, a mutant with 310 helices replacing a wild-type β-ribbon

Cordes, M. H. J., Walsh, N. P., McKnight, C. J. & Sauer, R. T., Feb 21 2003, In : Journal of Molecular Biology. 326, 3, p. 899-909 11 p.

Research output: Contribution to journalArticle

13 Scopus citations
2000

An evolutionary bridge to a new protein fold

Cordes, M. H. J., Burton, R. E., Walsh, N. P., McKnight, C. J. & Sauer, R. T., Dec 23 2000, In : Nature Structural Biology. 7, 12, p. 1129-1132 4 p.

Research output: Contribution to journalArticle

73 Scopus citations
1999

Tolerance of a protein to multiple polar-to-hydrophobic surface substitutions

Cordes, M. H. J. & Sauer, R. T., Feb 16 1999, In : Protein Science. 8, 2, p. 318-325 8 p.

Research output: Contribution to journalArticle

46 Scopus citations
1996
18 Scopus citations

Sequence space, folding and protein design

Cordes, M. H. J., Davidson, A. R. & Sauer, R. T., Feb 1996, In : Current Opinion in Structural Biology. 6, 1, p. 3-10 8 p.

Research output: Contribution to journalArticle

139 Scopus citations
1992
26 Scopus citations
1985

Inhibition of rabbit lung angiotensin-converting enzyme by N(α)-[(S)-1-carboxy-3-phenylpropyl]L-alanyl-L-proline and N(α)-[(S)-1-carboxy-3-phenylpropyl]L-lysyl-L-proline

Bull, H. G., Thornberry, N. A., Cordes, M. H. J. & Patchett, A. A., May 29 1985, In : Journal of Biological Chemistry. 260, 5, p. 2952-2962 11 p.

Research output: Contribution to journalArticle

86 Scopus citations