• Source: Scopus
  • Calculated based on no. of publications stored in Pure and citations from Scopus
1985 …2021

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  • Article

    Rapid and differential proliferation of the Ty3-Gypsy LTR retrotransposon Atlantys in the genus Oryza

    Zuccolo, A., Ammiraju, J. S. S., Kim, H. R., Sanyal, A., Jackson, S. & Wing, R. A., Sep 2008, In: Rice. 1, 1, p. 85-99 15 p.

    Research output: Contribution to journalArticlepeer-review

    6 Scopus citations
  • Rapid evolution of protein diversity by de novo origination in Oryza

    Zhang, L., Ren, Y., Yang, T., Li, G., Chen, J., Gschwend, A. R., Yu, Y., Hou, G., Zi, J., Zhou, R., Wen, B., Zhang, J., Chougule, K., Wang, M., Copetti, D., Peng, Z., Zhang, C., Zhang, Y., Ouyang, Y., Wing, R. A. & 2 others, Liu, S. & Long, M., Apr 1 2019, In: Nature Ecology and Evolution. 3, 4, p. 679-690 12 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    36 Scopus citations
  • Rate variation among nuclear genes and the age of polyploidy in Gossypium

    Senchina, D. S., Alvarez, I., Cronn, R. C., Liu, B., Rong, J., Noyes, R. D., Paterson, A. H., Wing, R. A., Wilkins, T. A. & Wendel, J. F., Apr 1 2003, In: Molecular biology and evolution. 20, 4, p. 633-643 11 p.

    Research output: Contribution to journalArticlepeer-review

    238 Scopus citations
  • Recurrent sequence exchange between homeologous grass chromosomes

    Wicker, T., Wing, R. A. & Schubert, I., Nov 1 2015, In: Plant Journal. 84, 4, p. 747-759 13 p.

    Research output: Contribution to journalArticlepeer-review

    3 Scopus citations
  • Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

    De Vega, J. J., Ayling, S., Hegarty, M., Kudrna, D., Goicoechea, J. L., Ergon, Å., Rognli, O. A., Jones, C., Swain, M., Geurts, R., Lang, C., Mayer, K. F. X., Rössner, S., Yates, S., Webb, K. J., Donnison, I. S., Oldroyd, G. E. D., Wing, R. A., Caccamo, M., Powell, W. & 2 others, Abberton, M. T. & Skøt, L., Nov 30 2015, In: Scientific reports. 5, 17394.

    Research output: Contribution to journalArticlepeer-review

    76 Scopus citations
  • Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers

    Cheng, Z., Buell, C. R., Wing, R. A. & Jiang, J., 2002, In: Chromosome Research. 10, 5, p. 379-387 9 p.

    Research output: Contribution to journalArticlepeer-review

    78 Scopus citations
  • Rice SNP-seek database update: New SNPs, indels, and queries

    Mansueto, L., Fuentes, R. R., Borja, F. N., Detras, J., Abrio-Santos, J. M., Chebotarov, D., Sanciangco, M., Palis, K., Copetti, D., Poliakov, A., Dubchak, I., Solovyev, V., Wing, R. A., Hamilton, R. S., Mauleon, R., McNally, K. L. & Alexandrov, N., Jan 1 2017, In: Nucleic acids research. 45, D1, p. D1075-D1081

    Research output: Contribution to journalArticlepeer-review

    123 Scopus citations
  • Rice structural variation: A comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza

    Hurwitz, B. L., Kudrna, D., Yu, Y., Sebastian, A., Zuccolo, A., Jackson, S. A., Ware, D., Wing, R. A. & Stein, L., Sep 2010, In: Plant Journal. 63, 6, p. 990-1003 14 p.

    Research output: Contribution to journalArticlepeer-review

    37 Scopus citations
  • Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors

    Mao, L., Wood, T. C., Yu, Y., Budiman, M. A., Tomkins, J., Woo, S. S., Sasinowski, M., Presting, G., Frisch, D., Goff, S., Dean, R. A. & Wing, R. A., 2000, In: Genome Research. 10, 7, p. 982-990 9 p.

    Research output: Contribution to journalArticlepeer-review

    172 Scopus citations
  • RiTE database: A resource database for genus-wide rice genomics and evolutionary biology

    Copetti, D., Zhang, J., El Baidouri, M., Gao, D., Wang, J., Barghini, E., Cossu, R. M., Angelova, A., Maldonado L., C. E., Roffler, S., Ohyanagi, H., Wicker, T., Fan, C., Zuccolo, A., Chen, M., Costa de Oliveira, A., Han, B., Henry, R., Hsing, Y. I., Kurata, N. & 4 others, Wang, W., Jackson, S. A., Panaud, O. & Wing, R. A., Jul 22 2015, In: BMC genomics. 16, 1, 538.

    Research output: Contribution to journalArticlepeer-review

    43 Scopus citations
  • RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection

    Venu, R. C., Jia, Y., Gowda, M., Jia, M. H., Jantasuriyarat, C., Stahlberg, E., Li, H., Rhineheart, A., Boddhireddy, P., Singh, P., Rutger, N., Kudrna, D., Wing, R., Nelson, J. C. & Wang, G. L., Oct 2007, In: Molecular Genetics and Genomics. 278, 4, p. 421-431 11 p.

    Research output: Contribution to journalArticlepeer-review

    41 Scopus citations
  • Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. The Rice Chromosome 3 Sequencing Consortium

    Buell, C. R., McCombie, W. R., Wing, R. A., Yuan, Q., Ouyang, S., Liu, J., Zhu, W., Wang, A., Maiti, R., Haas, B., Wortman, J., Pertea, M., Jones, K. M., Kim, M., Overton, L., Tsitrin, T., Fadrosh, D., Bera, J., Weaver, J., Jin, S. & 56 others, Johri, S., Reardon, M., Webb, K., Hill, J., Moffat, K., Tallon, L., Van Aken, S., Lewis, M., Utterback, T., Feldblyum, T., Zismann, V., Iobst, S., Hsiao, J., De Vazeille, A. R., Salzberg, S. L., White, O., Fraser, C., Yu, Y., Kim, H. R., Rambo, T., Currie, J., Collura, K., Kernodle-Thompson, S., Wei, F., Kudrna, D., Ammiraju, J. S. S., Luo, M., Goicoechea, J. L., Henry, D., Oates, R., Palmer, M., Pries, G., Saski, C., Simmons, J., Soderlund, C., Soderlund, C., Soderlund, C., Nelson, W., Soderlund, C., De La Bastide, M., Spiegel, L., Nascimento, L., Huang, E., Preston, R., Zutavern, T., Palmer, L., O'haughnessy, A., Dike, S., McCombie, W. R., Minx, P., Cordum, H., Wilson, R., Jin, W., Lee, H. R., Jiang, J. & Jackson, S., Sep 1 2005, In: Genome Research. 15, 9, p. 1284-1291 8 p.

    Research output: Contribution to journalArticlepeer-review

    57 Scopus citations
  • Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny

    Singh, N. K., Raghuvanshi, S., Srivastava, S. K., Gaur, A., Pal, A. K., Dalal, V., Singh, A., Ghazi, I. A., Bhargav, A., Yadav, M., Dixit, A., Batra, K., Gaikwad, K., Sharma, T. R., Mohanty, A., Bharti, A. K., Kapur, A., Gupta, V., Kumar, D., Vij, S. & 11 others, Vydianathan, R., Khurana, P., Sharma, S., McCombie, W. R., Messing, J., Wing, R., Sasaki, T., Khurana, P., Mohapatra, T., Khurana, J. P. & Tyagi, A. K., May 2004, In: Functional and Integrative Genomics. 4, 2, p. 102-117 16 p.

    Research output: Contribution to journalArticlepeer-review

    39 Scopus citations
  • Sequence and analysis of the tomato JOINTLESS locus

    Mao, L., Begum, D., Goff, S. A. & Wing, R. A., 2001, In: Plant physiology. 126, 3, p. 1331-1340 10 p.

    Research output: Contribution to journalArticlepeer-review

    32 Scopus citations
  • Sequence composition and genome organization of maize

    Messing, J., Bharti, A. K., Karlowski, W. M., Gundlach, H., Hye, R. K., Yu, Y., Wei, F., Fuks, G., Soderlund, C. A., Mayer, K. F. X. & Wing, R. A., Oct 5 2004, In: Proceedings of the National Academy of Sciences of the United States of America. 101, 40, p. 14349-14354 6 p.

    Research output: Contribution to journalArticlepeer-review

    232 Scopus citations
  • Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome

    Muñoz-Amatriaín, M., Lonardi, S., Luo, M., Madishetty, K., Svensson, J. T., Moscou, M. J., Wanamaker, S., Jiang, T., Kleinhofs, A., Muehlbauer, G. J., Wise, R. P., Stein, N., Ma, Y., Rodriguez, E., Kudrna, D., Bhat, P. R., Chao, S., Condamine, P., Heinen, S., Resnik, J. & 29 others, Wing, R., Witt, H. N., Alpert, M., Beccuti, M., Bozdag, S., Cordero, F., Mirebrahim, H., Ounit, R., Wu, Y., You, F., Zheng, J., Simková, H., Dolezel, J., Grimwood, J., Schmutz, J., Duma, D., Altschmied, L., Blake, T., Bregitzer, P., Cooper, L., Dilbirligi, M., Falk, A., Feiz, L., Graner, A., Gustafson, P., Hayes, P. M., Lemaux, P., Mammadov, J. & Close, T. J., Oct 1 2015, In: Plant Journal. 84, 1, p. 216-227 12 p.

    Research output: Contribution to journalArticlepeer-review

    24 Scopus citations
  • Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice

    Brozynska, M., Copetti, D., Furtado, A., Wing, R. A., Crayn, D., Fox, G., Ishikawa, R. & Henry, R. J., Jun 2017, In: Plant Biotechnology Journal. 15, 6, p. 765-774 10 p.

    Research output: Contribution to journalArticlepeer-review

    26 Scopus citations
  • Single nucleotide polymorphisms and insertion-deletions for genetic markers and anchoring the maize fingerprint contig physical map

    Vroh Bi, I., McMullen, M. D., Sanchez-Villeda, H., Schroeder, S., Gardiner, J., Polacco, M., Soderlund, C., Wing, R., Fang, Z. & Coe, E. H., Jan 2006, In: Crop Science. 46, 1, p. 12-21 10 p.

    Research output: Contribution to journalArticlepeer-review

    57 Scopus citations
  • Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts

    Pratt, L. H., Liang, C., Shah, M., Sun, F., Wang, H., Reid, S. P., Gingle, A. R., Paterson, A. H., Wing, R., Dean, R., Klein, R., Nguyen, H. T., Ma, H. M., Zhao, X., Morishige, D. T., Mullet, J. E. & Cordonnier-Pratt, M. M., 2005, In: Plant physiology. 139, 2, p. 869-884 16 p.

    Research output: Contribution to journalArticlepeer-review

    57 Scopus citations
  • Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza

    Ammiraju, J. S. S., Fan, C., Yu, Y., Song, X., Cranston, K. A., Pontaroli, A. C., Lu, F., Sanyal, A., Jiang, N., Rambo, T., Currie, J., Collura, K., Talag, J., Bennetzen, J. L., Chen, M., Jackson, S. & Wing, R. A., Aug 2010, In: Plant Journal. 63, 3, p. 430-442 13 p.

    Research output: Contribution to journalArticlepeer-review

    36 Scopus citations
  • Species trees from highly incongruent gene trees in rice

    Cranston, K. A., Hurwitz, B., Ware, D., Stein, L. & Wing, R. A., Oct 2009, In: Systematic biology. 58, 5, p. 489-500 12 p.

    Research output: Contribution to journalArticlepeer-review

    78 Scopus citations
  • Starch synthesis-related genes (Ssrg) evolution in the genus oryza

    Janner de Freitas, K. E., Dos Santos, R. S., Busanello, C., Victoria, F. D. C., Lopes, J. L., Wing, R. A. & de Oliveira, A. C., 2021, In: Plants. 10, 6, 1057.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Structural features of the rice chromosome 4 centromere

    Zhang, Y., Huang, Y., Zhang, L., Li, Y., Lu, T., Lu, Y., Feng, Q., Zhao, Q., Cheng, Z., Xue, Y., Wing, R. A. & Han, B., 2004, In: Nucleic acids research. 32, 6, p. 2023-2030 8 p.

    Research output: Contribution to journalArticlepeer-review

    84 Scopus citations
  • Structural variants in 3000 rice genomes

    Fuentes, R. R., Chebotarov, D., Duitama, J., Smith, S., De la Hoz, J. F., Mohiyuddin, M., Wing, R. A., McNally, K. L., Tatarinova, T., Grigoriev, A., Mauleon, R. & Alexandrov, N., May 2019, In: Genome Research. 29, 5, p. 870-880 11 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    44 Scopus citations
  • Structure and architecture of the maize genome

    Haberer, G., Young, S., Bharti, A. K., Gundlach, H., Raymond, C., Fuks, G., Butler, E., Wing, R. A., Rounsley, S., Birren, B., Nusbaum, C., Mayer, K. F. X. & Messing, J., 2005, In: Plant physiology. 139, 4, p. 1612-1624 13 p.

    Research output: Contribution to journalArticlepeer-review

    112 Scopus citations
  • Tetraploid nature of Sorghum bicolor (L.) Moench

    Gómez, M. I., Islam-Faridi, M. N., Zwick, M. S., Czeschin, D. G., Hart, G. E., Wing, R. A., Stelly, D. M. & Price, H. J., Mar 1998, In: Journal of Heredity. 89, 2, p. 188-190 3 p.

    Research output: Contribution to journalArticlepeer-review

    30 Scopus citations
  • The 19 genomes of Drosophila: A BAC library resource for genus-wide and genome-scale comparative evolutionary research

    Song, X., Goicoechea, J. L., Ammiraju, J. S. S., Luo, M., He, R., Lin, J., Lee, S. J., Sisneros, N., Watts, T., Kudrna, D. A., Golser, W., Ashley, E., Collura, K., Braidotti, M., Yu, Y., Matzkin, L. M., McAllister, B. F., Markow, T. A. & Wing, R. A., Apr 2011, In: Genetics. 187, 4, p. 1023-1030 8 p.

    Research output: Contribution to journalArticlepeer-review

    17 Scopus citations
  • The Amborella genome: An evolutionary reference for plant biology

    Soltis, D. E., Albert, V. A., Leebens-Mack, J., Palmer, J. D., Wing, R. A., dePamphilis, C. W., Ma, H., Carlson, J. E., Altman, N., Kim, S., Kerr, P. K., Zuccolo, A. & Soltis, P. S., Mar 10 2008, In: Genome biology. 9, 3, 402.

    Research output: Contribution to journalArticlepeer-review

    52 Scopus citations
  • The Amborella genome and the evolution of flowering plants

    DePamphilis, C. W., Palmer, J. D., Rounsley, S., Sankoff, D., Schuster, S. C., Ammiraju, J. S. S., Barbazuk, W. B., Chamala, S., Chanderbali, A. S., Determann, R., Hong, M., Ralph, P., Talag, J., Tomsho, L., Walts, B., Wanke, S., Wing, R. A., Chang, T. H., Lan, T., Soltis, D. E. & 57 others, Arikit, S., Axtell, M. J., Ayyampalayam, S., Burnette, J. M., De Paoli, E., Farrell, N. P., Harkess, A., Jiao, Y., Leebens-Mack, J., Liu, K., Mei, W., Meyers, B. C., Shahid, S., Wafula, E., Wessler, S. R., Zhai, J., Zhang, X., Albert, V. A., Carretero-Paulet, L., Lyons, E., Tang, H., Zheng, C., Altman, N. S., Chen, F., Chen, J. Q., Chiang, V., Der, J. P., Fogliani, B., Guo, C., Harholt, J., Job, C., Job, D., Kim, S., Kong, H., Li, G., Li, N., Liu, J., Park, J., Qi, X., Rajjou, L., Burtet-Sarramegna, V., Sederoff, R., Sun, Y. H., Ulvskov, P., Villegente, M., Xue, J. Y., Yeh, T. F., Yu, X., Acosta, J. J., Bruenn, R. A., De Kochko, A., Herrera-Estrella, L. R., Ibarra-Laclette, E., Kirst, M., Pissis, S. P., Poncet, V. & Soltis, P. S., 2013, In: Science. 342, 6165, 1241089.

    Research output: Contribution to journalArticlepeer-review

    493 Scopus citations
  • The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

    Dietrich, F. S., Voegeli, S., Brachat, S., Lerch, A., Gates, K., Steiner, S., Mohr, C., Pöhlmann, R., Luedi, P., Choi, S., Wing, R. A., Flavier, A., Gaffney, T. D. & Philippsen, P., Apr 9 2004, In: Science. 304, 5668, p. 304-307 4 p.

    Research output: Contribution to journalArticlepeer-review

    508 Scopus citations
  • The asparagus genome sheds light on the origin and evolution of a young y chromosome

    Harkess, A., Zhou, J., Xu, C., Bowers, J. E., Van Der Hulst, R., Ayyampalayam, S., Mercati, F., Riccardi, P., McKain, M. R., Kakrana, A., Tang, H., Ray, J., Groenendijk, J., Arikit, S., Mathioni, S. M., Nakano, M., Shan, H., Telgmann-Rauber, A., Kanno, A., Yue, Z. & 22 others, Chen, H., Li, W., Chen, Y., Xu, X., Zhang, Y., Luo, S., Chen, H., Gao, J., Mao, Z., Pires, J. C., Luo, M., Kudrna, D., Wing, R. A., Meyers, B. C., Yi, K., Kong, H., Lavrijsen, P., Sunseri, F., Falavigna, A., Ye, Y., Leebens-Mack, J. H. & Chen, G., Dec 1 2017, In: Nature communications. 8, 1, 1279.

    Research output: Contribution to journalArticlepeer-review

    108 Scopus citations
  • The B73 maize genome: Complexity, diversity, and dynamics

    Schnable, P. S., Ware, D., Fulton, R. S., Stein, J. C., Wei, F., Pasternak, S., Liang, C., Zhang, J., Fulton, L., Graves, T. A., Minx, P., Reily, A. D., Courtney, L., Kruchowski, S. S., Tomlinson, C., Strong, C., Delehaunty, K., Fronick, C., Courtney, B., Rock, S. M. & 137 others, Belter, E., Du, F., Kim, K., Abbott, R. M., Cotton, M., Levy, A., Marchetto, P., Ochoa, K., Jackson, S. M., Gillam, B., Chen, W., Yan, L., Higginbotham, J., Cardenas, M., Waligorski, J., Applebaum, E., Phelps, L., Falcone, J., Kanchi, K., Thane, T., Scimone, A., Thane, N., Henke, J., Wang, T., Ruppert, J., Shah, N., Rotter, K., Hodges, J., Ingenthron, E., Cordes, M., Kohlberg, S., Sgro, J., Delgado, B., Mead, K., Chinwalla, A., Leonard, S., Crouse, K., Collura, K., Kudrna, D., Currie, J., He, R., Angelova, A., Rajasekar, S., Mueller, T., Lomeli, R., Scara, G., Ko, A., Delaney, K., Wissotski, M., Lopez, G., Campos, D., Braidotti, M., Ashley, E., Golser, W., Kim, H., Lee, S., Lin, J., Dujmic, Z., Kim, W., Talag, J., Zuccolo, A., Fan, C., Sebastian, A., Kramer, M., Spiegel, L., Nascimento, L., Zutavern, T., Miller, B., Ambroise, C., Muller, S., Spooner, W., Narechania, A., Ren, L., Wei, S., Kumari, S., Faga, B., Levy, M. J., McMahan, L., Van Buren, P., Vaughn, M. W., Ying, K., Yeh, C. T., Emrich, S. J., Jia, Y., Kalyanaraman, A., Hsia, A. P., Barbazuk, W. B., Baucom, R. S., Brutnell, T. P., Carpita, N. C., Chaparro, C., Chia, J. M., Deragon, J. M., Estill, J. C., Fu, Y., Jeddeloh, J. A., Han, Y., Lee, H., Li, P., Lisch, D. R., Liu, S., Liu, Z., Nagel, D. H., McCann, M. C., Sanmiguel, P., Myers, A. M., Nettleton, D., Nguyen, J., Penning, B. W., Ponnala, L., Schneider, K. L., Schwartz, D. C., Sharma, A., Soderlund, C., Springer, N. M., Sun, Q., Wang, H., Waterman, M., Westerman, R., Wolfgruber, T. K., Yang, L., Yu, Y., Zhang, L., Zhou, S., Zhu, Q., Bennetzen, J. L., Dawe, R. K., Jiang, J., Jiang, N., Presting, G. G., Wessler, S. R., Aluru, S., Martienssen, R. A., Clifton, S. W., McCombie, W. R., Wing, R. A. & Wilson, R. K., Nov 20 2009, In: Science. 326, 5956, p. 1112-1115 4 p.

    Research output: Contribution to journalArticlepeer-review

    2720 Scopus citations
  • The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis

    Jung, J., Won, S. Y., Suh, S. C., Kim, H., Wing, R., Jeong, Y., Hwang, I. & Kim, M., Feb 2007, In: Planta. 225, 3, p. 575-588 14 p.

    Research output: Contribution to journalArticlepeer-review

    88 Scopus citations
  • The Cardamine hirsuta genome offers insight into the evolution of morphological diversity

    Gan, X., Hay, A., Kwantes, M., Haberer, G., Hallab, A., Ioio, R. D., Hofhuis, H., Pieper, B., Cartolano, M., Neumann, U., Nikolov, L. A., Song, B., Hajheidari, M., Briskine, R., Kougioumoutzi, E., Vlad, D., Broholm, S., Hein, J., Meksem, K., Lightfoot, D. & 11 others, Shimizu, K. K., Shimizu-Inatsugi, R., Imprialou, M., Kudrna, D., Wing, R., Sato, S., Huijser, P., Filatov, D., Mayer, K. F. X., Mott, R. & Tsiantis, M., Oct 31 2016, In: Nature plants. 2, 16167.

    Research output: Contribution to journalArticlepeer-review

    51 Scopus citations
  • The chromosome-scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis

    Wu, Z., Liu, H., Zhan, W., Yu, Z., Qin, E., Liu, S., Yang, T., Xiang, N., Kudrna, D., Chen, Y., Lee, S., Li, G., Wing, R. A., Liu, J., Xiong, H., Xia, C., Xing, Y., Zhang, J. & Qin, R., Sep 2021, In: Plant Biotechnology Journal. 19, 9, p. 1725-1742 18 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    2 Scopus citations
  • The future of rice genomics: Sequencing the collective Oryza genome

    Goicoechea, J. L., Ammiraju, J. S. S., Marri, P. R., Chen, M., Jackson, S., Yu, Y., Rounsley, S. & Wing, R. A., Sep 2010, In: Rice. 3, 2-3, p. 89-97 9 p.

    Research output: Contribution to journalArticlepeer-review

    12 Scopus citations
  • The genome of Theobroma cacao

    Argout, X., Salse, J., Aury, J. M., Guiltinan, M. J., Droc, G., Gouzy, J., Allegre, M., Chaparro, C., Legavre, T., Maximova, S. N., Abrouk, M., Murat, F., Fouet, O., Poulain, J., Ruiz, M., Roguet, Y., Rodier-Goud, M., Barbosa-Neto, J. F., Sabot, F., Kudrna, D. & 41 others, Ammiraju, J. S. S., Schuster, S. C., Carlson, J. E., Sallet, E., Schiex, T., Dievart, A., Kramer, M., Gelley, L., Shi, Z., Bérard, A., Viot, C., Boccara, M., Risterucci, A. M., Guignon, V., Sabau, X., Axtell, M. J., Ma, Z., Zhang, Y., Brown, S., Bourge, M., Golser, W., Song, X., Clement, D., Rivallan, R., Tahi, M., Akaza, J. M., Pitollat, B., Gramacho, K., D'Hont, A., Brunel, D., Infante, D., Kebe, I., Costet, P., Wing, R., McCombie, W. R., Guiderdoni, E., Quetier, F., Panaud, O., Wincker, P., Bocs, S. & Lanaud, C., Feb 2011, In: Nature Genetics. 43, 2, p. 101-108 8 p.

    Research output: Contribution to journalArticlepeer-review

    471 Scopus citations
  • The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

    Wang, M., Yu, Y., Haberer, G., Marri, P. R., Fan, C., Goicoechea, J. L., Zuccolo, A., Song, X., Kudrna, D., Ammiraju, J. S. S., Cossu, R. M., Maldonado, C., Chen, J., Lee, S., Sisneros, N., De Baynast, K., Golser, W., Wissotski, M., Kim, W., Sanchez, P. & 11 others, Ndjiondjop, M. N., Sanni, K., Long, M., Carney, J., Panaud, O., Wicker, T., MacHado, C. A., Chen, M., Mayer, K. F. X., Rounsley, S. & Wing, R. A., 2014, In: Nature Genetics. 46, 9, p. 982-988 7 p.

    Research output: Contribution to journalArticlepeer-review

    220 Scopus citations
  • The Hybaid Lecture. Microcollinearity and segmental duplication in the evolution of grass nuclear genomes.

    Bennetzen, J. L., SanMiguel, P., Liu, C. N., Chen, M., Tikhonov, A., Costa de Oliveira, A., Jin, Y. K., Avramova, Z., Woo, S. S., Zhang, H. & Wing, R. A., 1996, In: Symposia of the Society for Experimental Biology. 50, p. 1-3 3 p.

    Research output: Contribution to journalArticlepeer-review

    4 Scopus citations
  • The impact and origin of copy number variations in the Oryza species

    Bai, Z., Chen, J., Liao, Y., Wang, M., Liu, R., Ge, S., Wing, R. A. & Chen, M., 2016, In: BMC genomics. 17, 1, 261.

    Research output: Contribution to journalArticlepeer-review

    25 Scopus citations
  • The map-based sequence of the rice genome

    Matsumoto, T., Wu, J., Kanamori, H., Katayose, Y., Fujisawa, M., Namiki, N., Mizuno, H., Yamamoto, K., Antonio, B. A., Baba, T., Sakata, K., Nagamura, Y., Aoki, H., Arikawa, K., Arita, K., Bito, T., Chiden, Y., Fujitsuka, N., Fukunaka, R., Hamada, M. & 243 others, Harada, C., Hayashi, A., Hijishita, S., Honda, M., Hosokawa, S., Ichikawa, Y., Idonuma, A., Iijima, M., Ikeda, M., Ikeno, M., Ito, K., Ito, S., Ito, T., Ito, Y., Ito, Y., Iwabuchi, A., Kamiya, K., Karasawa, W., Kurita, K., Katagiri, S., Kikuta, A., Kobayashi, H., Kobayashi, N., MacHita, K., Maehara, T., Masukawa, M., Mizubayashi, T., Mukai, Y., Nagasaki, H., Nagata, Y., Naito, S., Nakashima, M., Nakama, Y., Nakamichi, Y., Nakamura, M., Meguro, A., Negishi, M., Ohta, I., Ohta, T., Okamoto, M., Ono, N., Saji, S., Sakaguchi, M., Sakai, K., Shibata, M., Shimokawa, T., Song, J., Takazaki, Y., Terasawa, K., Tsugane, M., Tsuji, K., Ueda, S., Waki, K., Yamagata, H., Yamamoto, M., Yamamoto, S., Yamane, H., Yoshiki, S., Yoshihara, R., Yukawa, K., Zhong, H., Yano, M., Sasaki, T., Yuan, Q., Ouyang, S., Liu, J., Jones, K. M., Gansberger, K., Moffat, K., Hill, J., Bera, J., Fadrosh, D., Jin, S., Johri, S., Kim, M., Overton, L., Reardon, M., Tsitrin, T., Vuong, H., Weaver, B., Ciecko, A., Tallon, L., Jackson, J., Pai, G., Van Aken, S., Utterback, T., Reidmuller, S., Feldblyum, T., Hsiao, J., Zismann, V., Iobst, S., De Vazeille, A. R., Buell, C. R., Ying, K., Li, Y., Lu, T., Huang, Y., Zhao, Q., Feng, Q., Zhang, L., Zhu, J., Weng, Q., Mu, J., Lu, Y., Fan, D., Liu, Y., Guan, J., Zhang, Y., Yu, S., Liu, X., Zhang, Y., Hong, G., Han, B., Choisne, N., Demange, N., Orjeda, G., Samain, S., Cattolico, L., Pelletier, E., Couloux, A., Segurens, B., Wincker, P., D'Hont, A., Scarpelli, C., Weissenbach, J., Salanoubat, M., Quetier, F., Yu, Y., Kim, H. R., Rambo, T., Currie, J., Collura, K., Luo, M., Yang, T. J., Ammiraju, J. S. S., Engler, F., Soderlund, C., Wing, R. A., Palmer, L. E., De La Bastide, M., Spiegel, L., Nascimento, L., Zutavern, T., O'Shaughnessy, A., Dike, S., Dedhia, N., Preston, R., Balija, V., McCombie, W. R., Chow, T. Y., Chen, H. H., Chung, M. C., Chen, C. S., Shaw, J. F., Wu, H. P., Hsiao, K. J., Chao, Y. T., Chu, M. K., Cheng, C. H., Hour, A. L., Lee, P. F., Lin, S. J., Lin, Y. C., Liou, J. Y., Liu, S. M., Hsing, Y. I., Raghuvanshi, S., Mohanty, A., Bharti, A. K., Gaur, A., Gupta, V., Kumar, D., Ravi, V., Vij, S., Kapur, A., Khurana, P., Khurana, P., Khurana, J. P., Tyagi, A. K., Gaikwad, K., Singh, A., Dalal, V., Srivastava, S., Dixit, A., Pal, A. K., Ghazi, I. A., Yadav, M., Pandit, A., Bhargava, A., Sureshbabu, K., Batra, K., Sharma, T. R., Mohapatra, T., Singh, N. K., Messing, J., Nelson, A. B., Fuks, G., Kavchok, S., Keizer, G., Llaca, E. L. V., Song, R., Tanyolac, B., Young, S., Ho, K., Hahn, J. H., Sangsakoo, G., Vanavichit, A., De Mattos, L. A. T., Zimmer, P. D., Malone, G., Dellagostin, O., De Oliveira, A. C., Bevan, M., Bancroft, I., Minx, P., Cordum, H., Wilson, R., Cheng, Z., Jin, W., Jiang, J., Leong, S. A., Iwama, H., Gojobori, T., Itoh, T., Niimura, Y., Fujii, Y., Habara, T., Sakai, H., Sato, Y., Wilson, G., Kumar, K., McCouch, S., Juretic, N., Hoen, D., Wright, S., Bruskiewich, R., Bureau, T., Miyao, A., Hirochika, H., Nishikawa, T., Kadowaki, K. I., Sugiura, M. & Burr, B., Aug 11 2005, In: Nature. 436, 7052, p. 793-800 8 p.

    Research output: Contribution to journalArticlepeer-review

    2834 Scopus citations
  • The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley

    Wei, F., Gobelman-Werner, K., Morroll, S. M., Kurth, J., Mao, L., Wing, R., Leister, D., Schulze-Lefert, P. & Wise, R. P., Dec 1 1999, In: Genetics. 153, 4, p. 1929-1948 20 p.

    Research output: Contribution to journalArticlepeer-review

    217 Scopus citations
  • The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

    Ammiraju, J. S. S., Luo, M., Goicoechea, J. L., Wang, W., Kudrna, D., Mueller, C., Talag, J., Kim, H. R., Sisneros, N. B., Blackmon, B., Fang, E., Tomkins, J. B., Brar, D., MacKill, D., McCouch, S., Kurata, N., Lambert, G., Galbraith, D. W., Arumuganathan, K., Rao, K. & 7 others, Walling, J. G., Gill, N., Yu, Y., SanMiguel, P., Soderlund, C., Jackson, S. & Wing, R. A., Jan 2006, In: Genome Research. 16, 1, p. 140-147 8 p.

    Research output: Contribution to journalArticlepeer-review

    174 Scopus citations
  • The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species

    Wing, R. A., Ammiraju, J. S. S., Luo, M., Kim, H. R., Yu, Y., Kudrna, D., Goicoechea, J. L., Wang, W., Nelson, W., Rao, K., Brar, D., Mackill, D. J., Han, B., Soderlund, C., Stein, L., SanMiguel, P. & Jackson, S., Sep 2005, In: Plant Molecular Biology. 59, 1, p. 53-62 10 p.

    Research output: Contribution to journalArticlepeer-review

    126 Scopus citations
  • The physical and genetic framework of the maize B73 genome

    Wei, F., Zhang, J., Zhou, S., He, R., Schaeffer, M., Collura, K., Kudrna, D., Faga, B. P., Wissotski, M., Golser, W., Rock, S. M., Graves, T. A., Fulton, R. S., Coe, E., Schnable, P. S., Schwartz, D. C., Ware, D., Clifton, S. W., Wilson, R. K. & Wing, R. A., Nov 2009, In: PLoS genetics. 5, 11, e1000715.

    Research output: Contribution to journalArticlepeer-review

    80 Scopus citations
  • The promoter signatures in rice LEA genes can be used to build a co-expressing LEA gene network

    Meier, S., Gehring, C., MacPherson, C. R., Kaur, M., Maqungo, M., Reuben, S., Muyanga, S., Shih, M. D., Wei, F. J., Wanchana, S., Mauleon, R., Radovanovic, A., Bruskiewich, R., Tanaka, T., Mohanty, B., Itoh, T., Wing, R., Gojobori, T., Sasaki, T., Swarup, S. & 2 others, Hsing, Y. I. & Bajic, V. B., Dec 2008, In: Rice. 1, 2, p. 177-187 11 p.

    Research output: Contribution to journalArticlepeer-review

    13 Scopus citations
  • The reference genome of the halophytic plant Eutrema salsugineum

    Yang, R., Jarvis, D. E., Chen, H., Beilstein, M. A., Grimwood, J., Jenkins, J., Shu, S. Q., Prochnik, S., Xin, M., Ma, C., Schmutz, J., Wing, R. A., Mitchell-Olds, T., Schumaker, K. S. & Wang, X., Mar 21 2013, In: Frontiers in Plant Science. 4, MAR, 46.

    Research output: Contribution to journalArticlepeer-review

    140 Scopus citations
  • The Rice Annotation Project Database (RAP-DB): 2008 update

    Tanaka, T., Antonio, B. A., Kikuchi, S., Matsumoto, T., Nagamura, Y., Numa, H., Sakai, H., Wu, J., Itoh, T., Sasaki, T., Aono, R., Fujii, Y., Habara, T., Harada, E., Kanno, M., Kawahara, Y., Kawashima, H., Kubooka, H., Matsuya, A., Nakaoka, H. & 71 others, Saichi, N., Sanbonmatsu, R., Sato, Y., Shinso, Y., Suzuki, M., Takeda, J., Tanino, M., Todokoro, F., Yamaguchi, K., Yamamoto, N., Yamasaki, C., Imanishi, T., Okido, T., Tada, M., Ikeo, K., Tateno, Y., Gojobori, T., Lin, Y. C., Wei, F. J., Hsing, Y., Zhao, Q., Han, B., Kramer, M. R., McCombie, R. W., Lonsdale, D., O’donovan, C. C., Whitfield, E. J., Apweiler, R., Koyanagi, K. O., Khurana, J. P., Raghuvanshi, S., Singh, N. K., Tyagi, A. K., Haberer, G., Fujisawa, M., Hosokawa, S., Ito, Y., Ikawa, H., Shibata, M., Yamamoto, M., Bruskiewich, R. M., Hoen, D. R., Bureau, T. E., Namiki, N., Ohyanagi, H., Sakai, Y., Nobushima, S., Sakata, K., Barrero, R. A., Sato, Y., Souvorov, A., Smith-White, B., Tatusova, T., An, S., An, G., Oota, S., Fuks, G., Messing, J., Christie, K. R., Lieberherr, D., Kim, H., Zuccolo, A., Wing, R. A., Nobuta, K., Green, P. J., Lu, C., Meyers, B. C., Chaparro, C., Piegu, B., Panaud, O. & Echeverria, M., Jan 1 2008, In: Nucleic acids research. 36, SUPPL. 1, p. D1028-D1033

    Research output: Contribution to journalArticlepeer-review

    278 Scopus citations
  • The rice paradox: Multiple origins but single domestication in Asian Rice

    Choi, J. Y., Platts, A. E., Fuller, D. Q., Hsing, Y. I., Wing, R. A., Purugganan, M. D. & Kim, Y., Apr 1 2017, In: Molecular biology and evolution. 34, 4, p. 969-979 11 p.

    Research output: Contribution to journalArticlepeer-review

    109 Scopus citations
  • The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

    Choisne, N., Demange, N., Orjeda, G., Samain, S., D'Hont, A., Cattolico, L., Pelletier, E., Couloux, A., Segurens, B., Wincker, P., Scarpelli, C., Weissenbach, J., Salanoubat, M., Singh, N. K., Mohapatra, T., Sharma, T. R., Gaikwad, K., Singh, A., Dalal, V., Srivastava, S. K. & 79 others, Dixit, A., Pal, A. K., Ghazi, I. A., Yadav, M., Pandit, A., Bhargava, A., Sureshbabu, K., Dixit, R., Singh, H., Swain, S. C., Pal, S., Ragiba, M., Singh, P. K., Singhal, V., Mendiratta, S. D., Batra, K., Raghuvanshi, S., Mohanty, A., Bharti, A. K., Gaur, A., Gupta, V., Kumar, D., Vydianathan, R., Vij, S., Kapur, A., Khurana, P., Sharma, S., Khurana, P., Khurana, J. P., Tyagi, A. K., Yuan, Q., Ouyang, S., Liu, J., Zhu, W., Wang, A., Lin, H., Hamilton, J., Haas, B., Wortman, J., Jones, K. M., Kim, M., Overton, L., Tsitrin, T., Fadrosh, D., Bera, J., Weaver, B., Jin, S., Johri, S., Reardon, M., Vuong, H., Tallon, L., Van Aken, S., Lewis, M., Utterback, T., Feldblyum, T., Zismann, V., Iobst, S., Hsiao, J., de Vazeille, A. R., Salzberg, S. L., White, O., Fraser, C., Buell, C. R., Yu, Y., Rambo, T., Currie, J., Collura, K., Kim, H. R., Stum, D., Wang, W., Kudrna, D., Mueller, C., Wing, R. A., Kramer, M., Spiegel, L., Nascimento, L., Preston, R., Zutavern, T. & Messing, J., Sep 27 2005, In: BMC biology. 3, 20.

    Research output: Contribution to journalArticlepeer-review

    144 Scopus citations