Stephen A Goff

  • 7944 Citations
  • 31 h-Index
1984 …2016
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Research Output 1984 2016

  • 7944 Citations
  • 31 h-Index
  • 49 Article
  • 1 Chapter
  • 1 Conference contribution
2016
97 Citations (Scopus)

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

Merchant, N. C., Lyons, E. H., Goff, S. A., Vaughn, M., Ware, D., Micklos, D. & Antin, P. B., Jan 11 2016, In : PLoS Biology. 14, 1, e1002342.

Research output: Contribution to journalArticle

Biological Science Disciplines
Computing Methodologies
researchers
Research Personnel
Workflow
2014
5 Citations (Scopus)

Allele workbench: Transcriptome pipeline and interactive graphics for allele-specific expression

Soderlund, C. A., Nelson, W. M. & Goff, S. A., Dec 26 2014, In : PLoS One. 9, 12, e115740.

Research output: Contribution to journalArticle

computer graphics
Transcriptome
transcriptome
Pipelines
Alleles
5 Citations (Scopus)

The Evolution of Plant Gene and Genome Sequencing

Goff, S. A., Schnable, J. C. & Feldmann, K. A., 2014, In : Advances in Botanical Research. 69, p. 47-90 44 p.

Research output: Contribution to journalArticle

genome
genes
plant biology
transcriptome
Arabidopsis
2 Citations (Scopus)

The First Plant Genome Sequence-Arabidopsis thaliana

Feldmann, K. A. & Goff, S. A., 2014, In : Advances in Botanical Research. 69, p. 91-117 27 p.

Research output: Contribution to journalArticle

Arabidopsis thaliana
genome
genes
transposons
exons
2013
36 Citations (Scopus)

Heterosis in elite hybrid rice: Speculation on the genetic and biochemical mechanisms

Goff, S. A. & Zhang, Q., May 2013, In : Current Opinion in Plant Biology. 16, 2, p. 221-227 7 p.

Research output: Contribution to journalArticle

biochemical mechanisms
heterosis
rice
overdominance
crop models
2012

Quantitative trait locus analysis using a partitioned linear model on a GPU cluster

Bailey, P. E., Patki, T., Striemer, G. M., Akoglu, A., Lowenthal, D. K., Bradbury, P., Vaughn, M., Wang, L. & Goff, S. A., 2012, Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2012. p. 752-760 9 p. 6270715

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Graphics processing unit
Data transfer
Program processors
Processing
2011
72 Citations (Scopus)
DNA Shuffling
Hybrid Vigor
energy efficiency
protein metabolism
heterosis
254 Citations (Scopus)

The iPlant collaborative: Cyberinfrastructure for plant biology

Goff, S. A., Vaughn, M., McKay, S., Lyons, E. H., Stapleton, A. E., Gessler, D., Matasci, N., Wang, L., Hanlon, M., Lenards, A., Muir, A., Merchant, N. C., Lowry, S., Mock, S., Helmke, M., Kubach, A., Narro, M., Hopkins, N., Micklos, D., Hilgert, U. K. K. & 45 others, Gonzales, M., Jordan, C., Skidmore, E., Dooley, R., Cazes, J., McLay, R., Lu, Z., Pasternak, S., Koesterke, L., Piel, W. H., Grene, R., Noutsos, C., Gendler, K., Feng, X., Tang, C., Lent, M., Kim, S. J., Kvilekval, K., Manjunath, B. S., Tannen, V., Stamatakis, A., Sanderson, M., Welch, S. M., Cranston, K. A., Soltis, P., Soltis, D., O'Meara, B., Ane, C., Brutnell, T., Kleibenstein, D. J., White, J. W., Leebens-Mack, J., Donoghue, M. J., Spalding, E. P., Vision, T. J., Myers, C. R., Lowenthal, D. K., Enquist, B., Boyle, B., Akoglu, A., Andrews, G., Ram, S., Ware, D., Stein, L. & Stanzione, D., Jul 25 2011, In : Frontiers in Plant Science. 2, JUL, 34.

Research output: Contribution to journalArticle

plant biology
computer science
application technology
information technology
forest products
2010
786 Citations (Scopus)

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Ma, L. J., Van Der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M. J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W. B., Woloshuk, C., Xie, X., Xu, J. R., Antoniw, J., Baker, S. E., Bluhm, B. H., Breakspear, A. & 43 others, Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P. M., Danchin, E. G. J., Diener, A., Gale, L. R., Gardiner, D. M., Goff, S. A., Hammond-Kosack, K. E., Hilburn, K., Hua-Van, A., Jonkers, W., Kazan, K., Kodira, C. D., Koehrsen, M., Kumar, L., Lee, Y. H., Li, L., Manners, J. M., Miranda-Saavedra, D., Mukherjee, M., Park, G., Park, J., Park, S. Y., Proctor, R. H., Regev, A., Ruiz-Roldan, M. C., Sain, D., Sakthikumar, S., Sykes, S., Schwartz, D. C., Turgeon, B. G., Wapinski, I., Yoder, O., Young, S., Zeng, Q., Zhou, S., Galagan, J., Cuomo, C. A., Kistler, H. C. & Rep, M., Mar 18 2010, In : Nature. 464, 7287, p. 367-373 7 p.

Research output: Contribution to journalArticle

Fusarium
Genomics
Virulence
Chromosomes
Genome
2006
377 Citations (Scopus)

Plant volatile compounds: Sensory cues for health and nutritional value?

Goff, S. A. & Klee, H. J., Feb 10 2006, In : Science. 311, 5762, p. 815-819 5 p.

Research output: Contribution to journalArticle

Nutritive Value
Cues
Food
Health
Carotenoids
2005
8 Citations (Scopus)

Erratum: A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) (Science (April 5, 2002) (92))

Goff, S. A., Aug 5 2005, In : Science. 309, 5736, p. 879 1 p.

Research output: Contribution to journalArticle

2004
20 Citations (Scopus)

BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea

Thon, M. R., Martin, S. L., Goff, S. A., Wing, R. A. & Dean, R. A., Jul 2004, In : Fungal Genetics and Biology. 41, 7, p. 657-666 10 p.

Research output: Contribution to journalArticle

Magnaporthe
DNA Transposable Elements
Cluster Analysis
Genome
Libraries
11 Citations (Scopus)

Back to the future of cereals

Goff, S. A. & Salmeron, J. M., Aug 2004, In : Scientific American. 291, 2, p. 42-49 8 p.

Research output: Contribution to journalArticle

Zea mays
Breeding
Genes
Technology
Bacterial DNA
120 Citations (Scopus)

Genomic Duplication, Fractionation and the Origin of Regulatory Novelty

Langham, R. J., Walsh, J., Dunn, M., Ko, C., Goff, S. A. & Freeling, M., Feb 2004, In : Genetics. 166, 2, p. 935-945 11 p.

Research output: Contribution to journalArticle

Zea mays
Conserved Sequence
Genes
Duplicate Genes
Basic-Leucine Zipper Transcription Factors
21 Citations (Scopus)

Regulation and a conserved intron sequence of liguleless3/4 knox class-I homeobox genes in grasses

Bauer, P., Lubkowitz, M., Tyers, R., Nemoto, K., Meeley, R. B., Goff, S. A. & Freeling, M., Jun 2004, In : Planta. 219, 2, p. 359-368 10 p.

Research output: Contribution to journalArticle

MHC Class I Genes
homeotic genes
Conserved Sequence
Homeobox Genes
Poaceae
2003
177 Citations (Scopus)

A network of rice genes associated with stress response and seed development

Cooper, B., Clarke, J. D., Budworth, P., Kreps, J., Hutchison, D., Park, S., Guimil, S., Dunn, M., Luginbühl, P., Ellero, C., Goff, S. A. & Glazebrook, J., Apr 15 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, 8, p. 4945-4950 6 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Seeds
Genes
Protein Interaction Domains and Motifs
Disease Resistance
91 Citations (Scopus)

Conserved noncoding sequences in the grasses

Inada, D. C., Bashir, A., Lee, C., Thomas, B. C., Ko, C., Goff, S. A. & Freeling, M., Sep 1 2003, In : Genome Research. 13, 9, p. 2030-2041 12 p.

Research output: Contribution to journalArticle

Conserved Sequence
Poaceae
Genes
Plant Genes
Sequence Alignment
12 Citations (Scopus)

Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle

Cooper, B., Hutchison, D., Park, S., Guimil, S., Luginbühl, P., Ellero, C., Goff, S. A. & Glazebrook, J., Oct 2003, In : Plant Molecular Biology. 53, 3, p. 273-279 7 p.

Research output: Contribution to journalArticle

Cyclins
cyclins
cell cycle
Oryza sativa
Cell Cycle
93 Citations (Scopus)

Whole-genome comparison of leucine-rich repeat extensins in arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade

Baumberger, N., Doesseger, B., Guyot, R., Diet, A., Parsons, R. L., Clark, M. A., Simmons, M. P., Bedinger, P., Goff, S. A., Ringli, C. & Keller, B., Mar 1 2003, In : Plant Physiology. 131, 3, p. 1313-1326 14 p.

Research output: Contribution to journalArticle

extensin
Arabidopsis
Leucine
Cell Wall
leucine
2002
2338 Citations (Scopus)

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)

Goff, S. A., Ricke, D., Lan, T. H., Presting, G., Wang, R., Dunn, M., Glazebrook, J., Sessions, A., Oeller, P., Varma, H., Hadley, D., Hutchison, D., Martin, C., Katagiri, F., Lange, B. M., Moughamer, T., Xia, Y., Budworth, P., Zhong, J., Miguel, T. & 35 others, Paszkowski, U., Zhang, S., Colbert, M., Sun, W. L., Chen, L., Cooper, B., Park, S., Wood, T. C., Mao, L., Quail, P., Wing, R. A., Deans, R., Yu, Y., Zharkikh, A., Shen, R., Sahasrabudhe, S., Thomas, A., Cannings, R., Gutin, A., Pruss, D., Reid, J., Tavtigian, S., Mitchell, J., Eldredge, G., Scholl, T., Miller, R. M., Bhatnagar, S., Adey, N., Rubano, T., Tusneem, N., Robinson, R., Feldhaus, J., Macalma, T., Oliphant, A. & Briggs, S., Apr 5 2002, In : Science. 296, 5565, p. 92-100 9 p.

Research output: Contribution to journalArticle

Genome
Synteny
Arabidopsis
Genes
Firearms
686 Citations (Scopus)

A high-throughput arabidopsis reverse genetics system

Sessions, A., Burke, E., Presting, G., Aux, G., McElver, J., Patton, D., Dietrich, B., Ho, P., Bacwaden, J., Ko, C., Clarke, J. D., Cotton, D., Bullis, D., Snell, J., Miguel, T., Hutchison, D., Kimmerly, B., Mitzel, T., Katagiri, F., Glazebrook, J. & 2 others, Law, M. & Goff, S. A., Dec 1 2002, In : Plant Cell. 14, 12, p. 2985-2994 10 p.

Research output: Contribution to journalArticle

Reverse Genetics
Arabidopsis
Throughput
DNA
Genes
4 Citations (Scopus)

Collaborating on the rice genome [2]

Goff, S. A., Apr 5 2002, In : Science. 296, 5565, p. 45-46 2 p.

Research output: Contribution to journalArticle

Plant Genome
International Cooperation
Access to Information
Nucleic Acid Databases
international cooperation
102 Citations (Scopus)

Large-scale structure-function analysis of the Arabidopsis RPM1 disease resistance protein

Tornero, P., Chao, R. A., Luthin, W. N., Goff, S. A. & Dangl, J. L., 2002, In : Plant Cell. 14, 2, p. 435-450 16 p.

Research output: Contribution to journalArticle

Disease Resistance
Arabidopsis
disease resistance
Alleles
hypersensitive response
3 Citations (Scopus)

Single nucleotide polymorphism analysis of the human adenosine A2B receptor gene: Prevalence of SNPs in asthmatics and normal subjects

Van Heeke, G., Seamons, R., Metais, J. Y., Fozard, J. R., Goff, S. A., Wheatley, A., Dewar, J. & Hall, I. P., 2002, In : Gene Function and Disease. 3, 3-4, p. 87-92 6 p.

Research output: Contribution to journalArticle

Adenosine A2B Receptors
Single Nucleotide Polymorphism
Population
Genes
Asthma
78 Citations (Scopus)

Utility and distribution of conserved noncoding sequences in the grasses

Kaplinsky, N. J., Braun, D. M., Penterman, J., Goff, S. A. & Freeling, M., Apr 30 2002, In : Proceedings of the National Academy of Sciences of the United States of America. 99, 9, p. 6147-6151 5 p.

Research output: Contribution to journalArticle

Conserved Sequence
Poaceae
Genes
Zea mays
Sequence Alignment
2001
5 Citations (Scopus)

Regulation of gene expression by small molecules in rice

Zhang, S., Chen, L. & Goff, S. A., 2001, Novartis Foundation Symposium. Vol. 236. p. 85-96 12 p. (Novartis Foundation Symposium; vol. 236).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Expression Regulation
Switch Genes
Ligands
Luciferases
Genetically Modified Plants
31 Citations (Scopus)

Sequence and analysis of the tomato JOINTLESS locus

Mao, L., Begum, D., Goff, S. A. & Wing, R. A., 2001, In : Plant Physiology. 126, 3, p. 1331-1340 10 p.

Research output: Contribution to journalArticle

Lycopersicon esculentum
Arabidopsis
Sequence Analysis
tomatoes
loci

Unraveling the genome of rice

Goff, S. A., 2001, In : Pesticide Outlook. 12, 4, p. 163-164 2 p.

Research output: Contribution to journalArticle

Genes
Genome
rice
genome
Oryza
2000
55 Citations (Scopus)

Isoform-specific localization of A-RAF in mitochondria

Yuryev, A., Ono, M., Goff, S. A., Macaluso, F. & Wennogle, L. P., Jul 2000, In : Molecular and Cellular Biology. 20, 13, p. 4870-4878 9 p.

Research output: Contribution to journalArticle

Mitochondria
Protein Isoforms
Proteins
14-3-3 Proteins
Liver Mitochondrion
170 Citations (Scopus)

Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors

Mao, L., Wood, T. C., Yu, Y., Budiman, M. A., Tomkins, J., Woo, S. S., Sasinowski, M., Presting, G., Frisch, D., Goff, S. A., Dean, R. A. & Wing, R. A., 2000, In : Genome Research. 10, 7, p. 982-990 9 p.

Research output: Contribution to journalArticle

DNA Transposable Elements
Retroelements
Expressed Sequence Tags
Libraries
Zea mays
255 Citations (Scopus)

The biosynthetic gene cluster for the microtubule-stabilizing agents epothilones A and B from Sorangium cellulosum So ce90

Molnar, I., Schupp, T., Ono, M., Zirkle, R. E., Milnamow, M., Nowak-Thompson, B., Engel, N., Toupet, C., Stratmann, A., Cyr, D. D., Gorlach, J., Mayo, J. M., Hu, A., Goff, S. A., Schmid, J. & Ligon, J. M., Feb 1 2000, In : Chemistry and Biology. 7, 2, p. 97-109 13 p.

Research output: Contribution to journalArticle

Epothilones
Excipients
Multigene Family
Microtubules
Genes
1999
72 Citations (Scopus)

Rice as a model for cereal genomics

Goff, S. A., Apr 1999, In : Current Opinion in Plant Biology. 2, 2, p. 86-89 4 p.

Research output: Contribution to journalArticle

genomics
rice
genome
clones
nucleotide sequences
1998
38 Citations (Scopus)

Activation of latent transgenes in Arabidopsis using a hybrid transcription factor

Guyer, D., Tuttle, A., Rouse, S., Volrath, S., Johnson, M., Potter, S., Görlach, J., Goff, S. A., Crossland, L. & Ward, E., Jun 1998, In : Genetics. 149, 2, p. 633-639 7 p.

Research output: Contribution to journalArticle

Transgenes
Arabidopsis
Adenylosuccinate Synthase
Transcription Factors
Transcriptional Activation
89 Citations (Scopus)

Cloning and sequence analysis of the putative rifamycin polyketide synthase gene cluster from Amycolatopsis mediterranei

Schupp, T., Toupet, C., Engel, N. & Goff, S. A., Feb 15 1998, In : FEMS Microbiology Letters. 159, 2, p. 201-207 7 p.

Research output: Contribution to journalArticle

Polyketide Synthases
Multigene Family
Sequence Analysis
Organism Cloning
Open Reading Frames
334 Citations (Scopus)

Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of arabidopsis

McDowell, J. M., Dhandaydham, M., Long, T. A., Aarts, M. G. M., Goff, S. A., Holub, E. B. & Dangl, J. L., Nov 1998, In : Plant Cell. 10, 11, p. 1861-1874 14 p.

Research output: Contribution to journalArticle

intragenic recombination
downy mildew
Arabidopsis
Genetic Recombination
Genes
1997
50 Citations (Scopus)
Acidic Amino Acids
Mutagenesis
Transcriptional Activation
Amino Acids
Leucine
8 Citations (Scopus)

Molecular and cellular characterization of baboon c-raf as a target for antiproliferative effects of antisense oligonucleotides

Mandiyan, S., Schumacher, C., Cioffi, C., Sharif, H., Yuryev, A., Lappe, R., Monia, B., Hanson, S., Goff, S. A. & Wennogle, L., 1997, In : Antisense and Nucleic Acid Drug Development. 7, 6, p. 539-548 10 p.

Research output: Contribution to journalArticle

Papio
Antisense Oligonucleotides
Messenger RNA
Muscle
Animals
1994
19 Citations (Scopus)

Plant activating sequences: Positively charged peptides are functional as transcriptional activation domains

Estruch, J. J., Crossland, L. & Goff, S. A., Sep 25 1994, In : Nucleic Acids Research. 22, 19, p. 3983-3989 7 p.

Research output: Contribution to journalArticle

Peptides
Transcriptional Activation
Activation
Chemical activation
Yeasts
1 Citation (Scopus)

Transformation of yeast cells by electroporation in combination with a screening method that avoids catabolic repression

Estruch, J. J., Goff, S. A. & Crossland, L., 1994, In : BioTechniques. 16, 4

Research output: Contribution to journalArticle

Genetic Transformation
Gene Transfer Techniques
Fungal Proteins
Electroporation
Sorbitol
1993
26 Citations (Scopus)

Ubiquitin pools, ubiquitin mRNA levels, and ubiquitin-mediated proteolysis in aging human fibroblasts

Pan, J. X., Short, S. R., Goff, S. A. & Dice, J. F., 1993, In : Experimental Gerontology. 28, 1, p. 39-49 11 p.

Research output: Contribution to journalArticle

Proteolysis
Fibroblasts
Ubiquitin
Aging of materials
Messenger RNA
1992
292 Citations (Scopus)
Helix-Loop-Helix Motifs
Zea mays
Anthocyanins
Yeasts
Transcriptional Activation
1991
98 Citations (Scopus)

C1- and R-dependent expression of the maize Bz1 gene requires sequences with homology to mammalian myb and myc binding sites

Roth, B. A., Goff, S. A., Klein, T. M. & Fromm, M. E., Mar 1991, In : Plant Cell. 3, 3, p. 317-325 9 p.

Research output: Contribution to journalArticle

Bronze
Sequence Homology
Base Pairing
Zea mays
binding sites
105 Citations (Scopus)

Identification of functional domains in the maize transcriptional activator C1: Comparison of wild-type and dominant inhibitor proteins

Goff, S. A., Cone, K. C. & Fromm, M. E., 1991, In : Genes and Development. 5, 2, p. 298-309 12 p.

Research output: Contribution to journalArticle

Anthocyanins
Zea mays
Transcriptional Activation
Complementary DNA
Amino Acids
1990
171 Citations (Scopus)

Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues

Goff, S. A., Klein, T. M., Roth, B. A., Fromm, M. E., Cone, K. C., Pablo Radicella, J. & Chandler, V. L., 1990, In : EMBO Journal. 9, 8, p. 2517-2522 6 p.

Research output: Contribution to journalArticle

Gene transfer
Peru
Anthocyanins
Regulator Genes
vpr Genes
1988
155 Citations (Scopus)

Sequence of the lon gene in Escherichia coli. A heat-shock gene which encodes the ATP-dependent protease La

Chin, D. T., Goff, S. A., Webster, T., Smith, T. & Goldberg, A. L., 1988, In : Journal of Biological Chemistry. 263, 24, p. 11718-11728 11 p.

Research output: Contribution to journalArticle

Protease La
ATP-Dependent Proteases
Escherichia coli
Shock
Hot Temperature
1987
82 Citations (Scopus)
Protease La
Escherichia coli
Proteolysis
Genes
Degradation
11 Citations (Scopus)

Laboratory methods. Efficient saturation mutagenesis of a pentapeptide coding sequence using mixed oligonucleotides

Goff, S. A., Short-Russell, S. R. & Dice, J. F., 1987, In : DNA. 6, 4, p. 381-388 8 p.

Research output: Contribution to journalArticle

Mutagenesis
Oligonucleotides
Bacteriophages
Codon
Mutation
4 Citations (Scopus)

Lysosomal degradation of microinjected proteins.

Dice, J. F., Backer, J. M., Chiang, H. L. & Goff, S. A., Oct 1987, In : Biochemical Society Transactions. 15, 5, p. 824-826 3 p.

Research output: Contribution to journalArticle

Pancreatic Ribonuclease
Peptide Fragments
Microinjections
Lysosomes
Protein Binding
2 Citations (Scopus)

The mechanism and regulation of the ATP-dependent protease La from Escherichia coli.

Goldberg, A. L., Menon, A. S., Goff, S. A. & Chin, D. T., Oct 1987, In : Biochemical Society Transactions. 15, 5, p. 809-811 3 p.

Research output: Contribution to journalArticle

Serine Endopeptidases
Protease La
ATP-Dependent Proteases
Allosteric Regulation
Endopeptidases
1985
347 Citations (Scopus)

Production of abnormal proteins in E. coli stimulates transcription of ion and other heat shock genes

Goff, S. A. & Goldberg, A. L., 1985, In : Cell. 41, 2, p. 587-595 9 p.

Research output: Contribution to journalArticle

Escherichia coli Proteins
Transcription
Escherichia coli
Shock
Hot Temperature