Stephen A Goff

  • 8117 Citations
  • 31 h-Index
1984 …2016

Research output per year

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Research Output

2016

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

Merchant, N., Lyons, E., Goff, S., Vaughn, M., Ware, D., Micklos, D. & Antin, P., Jan 11 2016, In : PLoS biology. 14, 1, e1002342.

Research output: Contribution to journalArticle

108 Scopus citations
2014

Allele workbench: Transcriptome pipeline and interactive graphics for allele-specific expression

Soderlund, C. A., Nelson, W. M. & Goff, S. A., Dec 26 2014, In : PloS one. 9, 12, e115740.

Research output: Contribution to journalArticle

5 Scopus citations

The Evolution of Plant Gene and Genome Sequencing

Goff, S. A., Schnable, J. C. & Feldmann, K. A., 2014, Advances in Botanical Research. Academic Press Inc., p. 47-90 44 p. (Advances in Botanical Research; vol. 69).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

The First Plant Genome Sequence-Arabidopsis thaliana

Feldmann, K. A. & Goff, S. A., 2014, Advances in Botanical Research. Academic Press Inc., p. 91-117 27 p. (Advances in Botanical Research; vol. 69).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2013

Heterosis in elite hybrid rice: Speculation on the genetic and biochemical mechanisms

Goff, S. A. & Zhang, Q., May 1 2013, In : Current Opinion in Plant Biology. 16, 2, p. 221-227 7 p.

Research output: Contribution to journalReview article

37 Scopus citations
2012

Quantitative trait locus analysis using a partitioned linear model on a GPU cluster

Bailey, P. E., Patki, T., Striemer, G. M., Akoglu, A., Lowenthal, D. K., Bradbury, P., Vaughn, M., Wang, L. & Goff, S., 2012, Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2012. p. 752-760 9 p. 6270715. (Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2011
75 Scopus citations

The iPlant collaborative: Cyberinfrastructure for plant biology

Goff, S. A., Vaughn, M., McKay, S., Lyons, E., Stapleton, A. E., Gessler, D., Matasci, N., Wang, L., Hanlon, M., Lenards, A., Muir, A., Merchant, N., Lowry, S., Mock, S., Helmke, M., Kubach, A., Narro, M., Hopkins, N., Micklos, D., Hilgert, U. & 45 others, Gonzales, M., Jordan, C., Skidmore, E., Dooley, R., Cazes, J., McLay, R., Lu, Z., Pasternak, S., Koesterke, L., Piel, W. H., Grene, R., Noutsos, C., Gendler, K., Feng, X., Tang, C., Lent, M., Kim, S. J., Kvilekval, K., Manjunath, B. S., Tannen, V., Stamatakis, A., Sanderson, M., Welch, S. M., Cranston, K. A., Soltis, P., Soltis, D., O'Meara, B., Ane, C., Brutnell, T., Kleibenstein, D. J., White, J. W., Leebens-Mack, J., Donoghue, M. J., Spalding, E. P., Vision, T. J., Myers, C. R., Lowenthal, D., Enquist, B. J., Boyle, B., Akoglu, A., Andrews, G., Ram, S., Ware, D., Stein, L. & Stanzione, D., Jul 25 2011, In : Frontiers in Plant Science. 2, JUL, 34.

Research output: Contribution to journalArticle

265 Scopus citations
2010

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Ma, L. J., Van Der Does, H. C., Borkovich, K. A., Coleman, J. J., Daboussi, M. J., Di Pietro, A., Dufresne, M., Freitag, M., Grabherr, M., Henrissat, B., Houterman, P. M., Kang, S., Shim, W. B., Woloshuk, C., Xie, X., Xu, J. R., Antoniw, J., Baker, S. E., Bluhm, B. H., Breakspear, A. & 43 others, Brown, D. W., Butchko, R. A. E., Chapman, S., Coulson, R., Coutinho, P. M., Danchin, E. G. J., Diener, A., Gale, L. R., Gardiner, D. M., Goff, S., Hammond-Kosack, K. E., Hilburn, K., Hua-Van, A., Jonkers, W., Kazan, K., Kodira, C. D., Koehrsen, M., Kumar, L., Lee, Y. H., Li, L., Manners, J. M., Miranda-Saavedra, D., Mukherjee, M., Park, G., Park, J., Park, S. Y., Proctor, R. H., Regev, A., Ruiz-Roldan, M. C., Sain, D., Sakthikumar, S., Sykes, S., Schwartz, D. C., Turgeon, B. G., Wapinski, I., Yoder, O., Young, S., Zeng, Q., Zhou, S., Galagan, J., Cuomo, C. A., Kistler, H. C. & Rep, M., Mar 18 2010, In : Nature. 464, 7287, p. 367-373 7 p.

Research output: Contribution to journalArticle

828 Scopus citations
2006

Plant volatile compounds: Sensory cues for health and nutritional value?

Goff, S. A. & Klee, H. J., Feb 10 2006, In : Science. 311, 5762, p. 815-819 5 p.

Research output: Contribution to journalReview article

391 Scopus citations
2005

Erratum: A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) (Science (April 5, 2002) (92))

Goff, S. A., Aug 5 2005, In : Science. 309, 5736, 1 p.

Research output: Contribution to journalComment/debate

8 Scopus citations
2004

BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea

Thon, M. R., Martin, S. L., Goff, S., Wing, R. A. & Dean, R. A., Jul 1 2004, In : Fungal Genetics and Biology. 41, 7, p. 657-666 10 p.

Research output: Contribution to journalArticle

20 Scopus citations

Back to the future of cereals

Goff, S. A. & Salmeron, J. M., Aug 2004, In : Scientific American. 291, 2, p. 42-49 8 p.

Research output: Contribution to journalArticle

11 Scopus citations

Genomic Duplication, Fractionation and the Origin of Regulatory Novelty

Langham, R. J., Walsh, J., Dunn, M., Ko, C., Goff, S. A. & Freeling, M., Feb 1 2004, In : Genetics. 166, 2, p. 935-945 11 p.

Research output: Contribution to journalArticle

121 Scopus citations

Regulation and a conserved intron sequence of liguleless3/4 knox class-I homeobox genes in grasses

Bauer, P., Lubkowitz, M., Tyers, R., Nemoto, K., Meeley, R. B., Goff, S. A. & Freeling, M., Jun 1 2004, In : Planta. 219, 2, p. 359-368 10 p.

Research output: Contribution to journalArticle

21 Scopus citations
2003

A network of rice genes associated with stress response and seed development

Cooper, B., Clarke, J. D., Budworth, P., Kreps, J., Hutchison, D., Park, S., Guimil, S., Dunn, M., Luginbühl, P., Ellero, C., Goff, S. A. & Glazebrook, J., Apr 15 2003, In : Proceedings of the National Academy of Sciences of the United States of America. 100, 8, p. 4945-4950 6 p.

Research output: Contribution to journalArticle

183 Scopus citations

Conserved noncoding sequences in the grasses

Inada, D. C., Bashir, A., Lee, C., Thomas, B. C., Ko, C., Goff, S. A. & Freeling, M., Sep 1 2003, In : Genome Research. 13, 9, p. 2030-2041 12 p.

Research output: Contribution to journalArticle

92 Scopus citations

Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle

Cooper, B., Hutchison, D., Park, S., Guimil, S., Luginbühl, P., Ellero, C., Goff, S. A. & Glazebrook, J., Oct 1 2003, In : Plant Molecular Biology. 53, 3, p. 273-279 7 p.

Research output: Contribution to journalArticle

12 Scopus citations

Whole-genome comparison of leucine-rich repeat extensins in arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade

Baumberger, N., Doesseger, B., Guyot, R., Diet, A., Parsons, R. L., Clark, M. A., Simmons, M. P., Bedinger, P., Goff, S. A., Ringli, C. & Keller, B., Mar 1 2003, In : Plant physiology. 131, 3, p. 1313-1326 14 p.

Research output: Contribution to journalArticle

96 Scopus citations
2002

A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)

Goff, S. A., Ricke, D., Lan, T. H., Presting, G., Wang, R., Dunn, M., Glazebrook, J., Sessions, A., Oeller, P., Varma, H., Hadley, D., Hutchison, D., Martin, C., Katagiri, F., Lange, B. M., Moughamer, T., Xia, Y., Budworth, P., Zhong, J., Miguel, T. & 35 others, Paszkowski, U., Zhang, S., Colbert, M., Sun, W. L., Chen, L., Cooper, B., Park, S., Wood, T. C., Mao, L., Quail, P., Wing, R., Deans, R., Yu, Y., Zharkikh, A., Shen, R., Sahasrabudhe, S., Thomas, A., Cannings, R., Gutin, A., Pruss, D., Reid, J., Tavtigian, S., Mitchell, J., Eldredge, G., Scholl, T., Miller, R. M., Bhatnagar, S., Adey, N., Rubano, T., Tusneem, N., Robinson, R., Feldhaus, J., Macalma, T., Oliphant, A. & Briggs, S., Apr 5 2002, In : Science. 296, 5565, p. 92-100 9 p.

Research output: Contribution to journalArticle

2373 Scopus citations

A high-throughput arabidopsis reverse genetics system

Sessions, A., Burke, E., Presting, G., Aux, G., McElver, J., Patton, D., Dietrich, B., Ho, P., Bacwaden, J., Ko, C., Clarke, J. D., Cotton, D., Bullis, D., Snell, J., Miguel, T., Hutchison, D., Kimmerly, B., Mitzel, T., Katagiri, F., Glazebrook, J. & 2 others, Law, M. & Goff, S. A., Dec 1 2002, In : Plant Cell. 14, 12, p. 2985-2994 10 p.

Research output: Contribution to journalArticle

699 Scopus citations

Collaborating on the rice genome [2]

Goff, S. A., Apr 5 2002, In : Science. 296, 5565, p. 45-46 2 p.

Research output: Contribution to journalLetter

4 Scopus citations

Large-scale structure-function analysis of the Arabidopsis RPM1 disease resistance protein

Tornero, P., Chao, R. A., Luthin, W. N., Goff, S. A. & Dangl, J. L., 2002, In : Plant Cell. 14, 2, p. 435-450 16 p.

Research output: Contribution to journalArticle

105 Scopus citations

Single nucleotide polymorphism analysis of the human adenosine A2B receptor gene: Prevalence of SNPs in asthmatics and normal subjects

Van Heeke, G., Seamons, R., Metais, J. Y., Fozard, J. R., Goff, S., Wheatley, A., Dewar, J. & Hall, I. P., Jan 1 2002, In : Gene Function and Disease. 3, 3-4, p. 87-92 6 p.

Research output: Contribution to journalArticle

3 Scopus citations

Utility and distribution of conserved noncoding sequences in the grasses

Kaplinsky, N. J., Braun, D. M., Penterman, J., Goff, S. A. & Freeling, M., Apr 30 2002, In : Proceedings of the National Academy of Sciences of the United States of America. 99, 9, p. 6147-6151 5 p.

Research output: Contribution to journalArticle

78 Scopus citations
2001

Regulation of gene expression by small molecules in rice

Zhang, S., Chen, L. & Goff, S. A., Dec 1 2001, In : Novartis Foundation Symposium. 236, p. 85-96 12 p.

Research output: Contribution to journalArticle

5 Scopus citations

Sequence and analysis of the tomato JOINTLESS locus

Mao, L., Begum, D., Goff, S. A. & Wing, R. A., Aug 1 2001, In : Plant physiology. 126, 3, p. 1331-1340 10 p.

Research output: Contribution to journalArticle

31 Scopus citations

Unraveling the genome of rice

Goff, S. A., Oct 11 2001, In : Pesticide Outlook. 12, 4, p. 163-164 2 p.

Research output: Contribution to journalShort survey

2000

Isoform-specific localization of A-RAF in mitochondria

Yuryev, A., Ono, M., Goff, S. A., Macaluso, F. & Wennogle, L. P., Jul 1 2000, In : Molecular and cellular biology. 20, 13, p. 4870-4878 9 p.

Research output: Contribution to journalArticle

56 Scopus citations

Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors

Mao, L., Wood, T. C., Yu, Y., Budiman, M. A., Tomkins, J., Woo, S. S., Sasinowski, M., Presting, G., Frisch, D., Goff, S., Dean, R. A. & Wing, R. A., 2000, In : Genome Research. 10, 7, p. 982-990 9 p.

Research output: Contribution to journalArticle

170 Scopus citations

The biosynthetic gene cluster for the microtubule-stabilizing agents epothilones A and B from Sorangium cellulosum So ce90

Molnár, I., Schupp, T., Ono, M., Zirkle, R. E., Milnamow, M., Nowak-Thompson, B., Engel, N., Toupet, C., Stratmann, A., Cyr, D. D., Gorlach, J., Mayo, J. M., Hu, A., Goff, S., Schmid, J. & Ligon, J. M., Feb 1 2000, In : Chemistry and Biology. 7, 2, p. 97-109 13 p.

Research output: Contribution to journalArticle

256 Scopus citations
1999

Rice as a model for cereal genomics

Goff, S. A., Apr 1999, In : Current Opinion in Plant Biology. 2, 2, p. 86-89 4 p.

Research output: Contribution to journalArticle

72 Scopus citations
1998

Activation of latent transgenes in Arabidopsis using a hybrid transcription factor

Guyer, D., Tuttle, A., Rouse, S., Volrath, S., Johnson, M., Potter, S., Görlach, J., Goff, S., Crossland, L. & Ward, E., Jun 1998, In : Genetics. 149, 2, p. 633-639 7 p.

Research output: Contribution to journalArticle

41 Scopus citations

Cloning and sequence analysis of the putative rifamycin polyketide synthase gene cluster from Amycolatopsis mediterranei

Schupp, T., Toupet, C., Engel, N. & Goff, S., Feb 15 1998, In : FEMS Microbiology Letters. 159, 2, p. 201-207 7 p.

Research output: Contribution to journalArticle

89 Scopus citations

Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of arabidopsis

McDowell, J. M., Dhandaydham, M., Long, T. A., Aarts, M. G. M., Goff, S., Holub, E. B. & Dangl, J. L., Nov 1 1998, In : Plant Cell. 10, 11, p. 1861-1874 14 p.

Research output: Contribution to journalArticle

336 Scopus citations
1997
Open Access
51 Scopus citations

Molecular and cellular characterization of baboon c-raf as a target for antiproliferative effects of antisense oligonucleotides

Mandiyan, S., Schumacher, C., Cioffi, C., Sharif, H., Yuryev, A., Lappe, R., Monia, B., Hanson, S., Goff, S. & Wennogle, L., Jan 1 1997, In : Antisense and Nucleic Acid Drug Development. 7, 6, p. 539-548 10 p.

Research output: Contribution to journalArticle

8 Scopus citations
1994

Plant activating sequences: Positively charged peptides are functional as transcriptional activation domains

Estruch, J. J., Crossland, L. & Goff, S. A., Sep 25 1994, In : Nucleic acids research. 22, 19, p. 3983-3989 7 p.

Research output: Contribution to journalArticle

19 Scopus citations

Transformation of yeast cells by electroporation in combination with a screening method that avoids catabolic repression

Estruch, J. J., Goff, S. A. & Crossland, L., 1994, In : BioTechniques. 16, 4, p. 610+612

Research output: Contribution to journalArticle

1 Scopus citations
1993

Ubiquitin pools, ubiquitin mRNA levels, and ubiquitin-mediated proteolysis in aging human fibroblasts

Pan, J. X., Short, S. R., Goff, S. A. & Dice, J. F., Jan 1 1993, In : Experimental Gerontology. 28, 1, p. 39-49 11 p.

Research output: Contribution to journalArticle

26 Scopus citations
1992
Open Access
297 Scopus citations
1991

C1- and R-dependent expression of the maize Bz1 gene requires sequences with homology to mammalian myb and myc binding sites

Roth, B. A., Goff, S. A., Klein, T. M. & Fromm, M. E., Mar 1 1991, In : Plant Cell. 3, 3, p. 317-325 9 p.

Research output: Contribution to journalArticle

98 Scopus citations

Identification of functional domains in the maize transcriptional activator C1: Comparison of wild-type and dominant inhibitor proteins

Goff, S. A., Cone, K. C. & Fromm, M. E., Jan 1 1991, In : Genes and Development. 5, 2, p. 298-309 12 p.

Research output: Contribution to journalArticle

Open Access
108 Scopus citations
1990

Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues

Goff, S. A., Klein, T. M., Roth, B. A., Fromm, M. E., Cone, K. C., Radicella, J. P. & Chandler, V. L., 1990, In : EMBO Journal. 9, 8, p. 2517-2522 6 p.

Research output: Contribution to journalArticle

176 Scopus citations
1988

Sequence of the lon gene in Escherichia coli. A heat-shock gene which encodes the ATP-dependent protease La

Chin, D. T., Goff, S. A., Webster, T., Smith, T. & Goldberg, A. L., Jan 1 1988, In : Journal of Biological Chemistry. 263, 24, p. 11718-11728 11 p.

Research output: Contribution to journalArticle

155 Scopus citations
1987

An increased content of protease La, the lon gene product, increases protein degradation and blocks growth in Escherichia coli

Goff, S. A. & Goldberg, A. L., Jan 1 1987, In : Journal of Biological Chemistry. 262, 10, p. 4508-4515 8 p.

Research output: Contribution to journalArticle

84 Scopus citations

Efficient Saturation Mutagenesis of a Pentapeptide Coding Sequence Using Mixed Oligonucleotides

Goff, S. A., Short-Russell, S. R. & Dice, J. F., Aug 1987, In : DNA. 6, 4, p. 381-388 8 p.

Research output: Contribution to journalArticle

11 Scopus citations

Lysosomal degradation of microinjected proteins.

Dice, J. F., Backer, J. M., Chiang, H. L. & Goff, S. A., Oct 1987, In : Biochemical Society transactions. 15, 5, p. 824-826 3 p.

Research output: Contribution to journalArticle

4 Scopus citations

The mechanism and regulation of the ATP-dependent protease La from Escherichia coli.

Goldberg, A. L., Menon, A. S., Goff, S. & Chin, D. T., Oct 1987, In : Biochemical Society transactions. 15, 5, p. 809-811 3 p.

Research output: Contribution to journalArticle

2 Scopus citations
1985

Production of abnormal proteins in E. coli stimulates transcription of ion and other heat shock genes

Goff, S. A. & Goldberg, A. L., Jun 1985, In : Cell. 41, 2, p. 587-595 9 p.

Research output: Contribution to journalArticle

351 Scopus citations