• 278 Citations
  • 9 h-Index
20092017
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Research Output 2009 2017

  • 278 Citations
  • 9 h-Index
  • 15 Article
2017
4 Citations (Scopus)

Gene expression variability and the analysis of large-scale RNA-seq studies with the MDSeq

Ran, D. & Daye, Z. J., Jul 1 2017, In : Nucleic Acids Research. 45, 13, e127.

Research output: Contribution to journalArticle

RNA
Gene Expression
Neurodegenerative Diseases
Genes
Linear Models
7 Citations (Scopus)

Identification of molecular markers for oocyte competence in bovine cumulus cells

Melo, E. O., Cordeiro, D. M., Pellegrino, R., Wei, Z., Daye, Z. J., Nishimura, R. C. & Dode, M. A. N., Feb 1 2017, In : Animal Genetics. 48, 1, p. 19-29 11 p.

Research output: Contribution to journalArticle

Cumulus Cells
Mental Competency
Oocytes
oocytes
genetic markers
1 Citation (Scopus)
Breast Neoplasms
Software
alachlor
Biological Factors
Genomics
2016
25 Citations (Scopus)

Accuracy of unenhanced Mr imaging in the Detection of acute appendicitis: Single-institution clinical performance review1

Petkovska, I., Martin, D. R., Covington, M. F., Urbina, S., Duke, E., Daye, Z. J., Stolz, L. A., Keim, S. M., Costello, J. R., Chundru, S., Arif-Tiwari, H., Gilbertson-Dahdal, D. ., Gries, L. & Kalb, B. T., May 1 2016, In : Radiology. 279, 2, p. 451-460 10 p.

Research output: Contribution to journalArticle

Appendicitis
Magnetic Resonance Imaging
Pain
Contrast Media
Hospital Emergency Service
61 Citations (Scopus)
Appendicitis
Meta-Analysis
Sensitivity and Specificity
Routine Diagnostic Tests
PubMed
3 Citations (Scopus)

Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level

Jeng, X. J., Daye, Z. J., Lu, W. & Tzeng, J. Y., Jun 1 2016, In : PLoS Computational Biology. 12, 6, e1004993.

Research output: Contribution to journalArticle

Sequencing
Locus
loci
gene
Molecular Sequence Annotation
2015
19 Citations (Scopus)

Oxidant stress regulatory genetic variation in recipients and donors contributes to risk of primary graft dysfunction after lung transplantation

Cantu, E., Shah, R. J., Lin, W., Daye, Z. J., Diamond, J. M., Suzuki, Y., Ellis, J. H., Borders, C. F., Andah, G. A., Beduhn, B., Meyer, N. J., Ruschefski, M., Aplenc, R., Feng, R. & Christie, J. D., Feb 1 2015, In : Journal of Thoracic and Cardiovascular Surgery. 149, 2, p. 596-602.e3

Research output: Contribution to journalArticle

Primary Graft Dysfunction
Lung Transplantation
Oxidants
Tissue Donors
NADPH Oxidase
2013
23 Citations (Scopus)

Distinct gene-expression profiles associated with the susceptibility of pathogen-specific CD4 T cells to HIV-1 infection

Hu, H., Nau, M., Ehrenberg, P., Chenine, A. L., MacEdo, C., Zhou, Y., Daye, Z. J., Wei, Z., Vahey, M., Michael, N. L., Kim, J. H., Marovich, M. & Ratto-Kim, S., Feb 14 2013, In : Blood. 121, 7, p. 1136-1144 9 p.

Research output: Contribution to journalArticle

Tetanus Toxoid
T-cells
Pathogens
Transcriptome
Gene expression
2012
21 Citations (Scopus)

A powerful test for multiple rare variants association studies that incorporates sequencing qualities

Daye, Z. J., Li, H. & Wei, Z., Apr 2012, In : Nucleic Acids Research. 40, 8

Research output: Contribution to journalArticle

Obesity
Genotype
Costs and Cost Analysis
3' Untranslated Regions
Genetic Promoter Regions
6 Citations (Scopus)
Shrinkage Estimator
Varying Coefficient Model
Nonparametric Model
Genomics
Covariates
27 Citations (Scopus)

High-Dimensional Heteroscedastic Regression with an Application to eQTL Data Analysis

Daye, Z. J., Chen, J. & Li, H., Mar 2012, In : Biometrics. 68, 1, p. 316-326 11 p.

Research output: Contribution to journalArticle

heteroskedasticity
Heteroscedastic Regression
Quantitative Trait Loci
Heteroscedasticity
quantitative trait loci
14 Citations (Scopus)

SNP-set analysis replicates acute lung injury genetic risk factors

Meyer, N. J., Daye, Z. J., Rushefski, M., Aplenc, R., Lanken, P. N., Shashaty, M. G. S., Christie, J. D. & Feng, R., Jun 28 2012, In : BMC Medical Genetics. 13, 52.

Research output: Contribution to journalArticle

Acute Lung Injury
Single Nucleotide Polymorphism
Genes
Wounds and Injuries
Haplotypes
20 Citations (Scopus)

Whole blood genome-wide gene expression profile in males after prolonged wakefulness and sleep recovery

Pellegrino, R., Sunaga, D. Y., Guindalini, C., Martins, R. C. S., Mazzotti, D. R., Wei, Z., Daye, Z. J., Andersen, M. L. & Tufik, S., Nov 2 2012, In : Physiological Genomics. 44, 21, p. 1003-1012 10 p.

Research output: Contribution to journalArticle

Wakefulness
Transcriptome
Sleep
Genome
NK Cell Lectin-Like Receptors
2011
7 Citations (Scopus)

Sparse covariance thresholding for high-dimensional variable selection

Jeng, X. J. & Daye, Z. J., Apr 2011, In : Statistica Sinica. 21, 2, p. 625-657 33 p.

Research output: Contribution to journalArticle

Variable Selection
Thresholding
High-dimensional
Sparsity
Lasso
2009
40 Citations (Scopus)

Shrinkage and model selection with correlated variables via weighted fusion

Daye, Z. J. & Jeng, X. J., Feb 15 2009, In : Computational Statistics and Data Analysis. 53, 4, p. 1284-1298 15 p.

Research output: Contribution to journalArticle

Shrinkage
Model Selection
Fusion
Fusion reactions
Variable Selection