A genome-wide association study platform built on iPlant cyber-infrastructure

Liya Wang, Doreen Ware, Carol Lushbough, Nirav C Merchant, Lincoln Stein

Research output: Contribution to journalArticle

4 Scopus citations

Abstract

Summary We demonstrate a flexible genome-wide association study platform built upon the iPlant Collaborative Cyber-infrastructure. The platform supports big data management, sharing, and large-scale study of both genotype and phenotype data on clusters. End users can add their own analysis tools and create customized analysis workflows through the graphical user interfaces in both iPlant Discovery Environment and BioExtract server.

Original languageEnglish (US)
Pages (from-to)420-432
Number of pages13
JournalConcurrency Computation
Volume27
Issue number2
DOIs
StatePublished - Feb 1 2015

Keywords

  • BioExtract server
  • GWAS
  • iPlant Data Store
  • iPlant Discovery Environment
  • iPlant Foundation API

ASJC Scopus subject areas

  • Theoretical Computer Science
  • Software
  • Computer Science Applications
  • Computer Networks and Communications
  • Computational Theory and Mathematics

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