A simple method for measuring signs of 1HN chemical shift differences between ground and excited protein states

Guillaume Bouvignies, Dmitry M. Korzhnev, Philipp Neudecker, D. Flemming Hansen, Matthew Hj Cordes, Lewis E. Kay

Research output: Contribution to journalArticle

18 Citations (Scopus)

Abstract

NMR relaxation dispersion spectroscopy is a powerful method for studying protein conformational dynamics whereby visible, ground and invisible, excited conformers interconvert on the millisecond time-scale. In addition to providing kinetics and thermodynamics parameters of the exchange process, the CPMG dispersion experiment also allows extraction of the absolute values of the chemical shift differences between interconverting states, |δω̄|, opening the way for structure determination of excited state conformers. Central to the goal of structural analysis is the availability of the chemical shifts of the excited state that can only be obtained once the signs of δω̄ are known. Herein we describe a very simple method for determining the signs of 1HN δω̄ values based on a comparison of peak positions in the directly detected dimensions of a pair of 1HN-15N correlation maps recorded at different static magnetic fields. The utility of the approach is demonstrated for three proteins that undergo millisecond time-scale conformational rearrangements. Although the method provides fewer signs than previously published techniques it does have a number of strengths: (1) Data sets needed for analysis are typically available from other experiments, such as those required for measuring signs of 15N δω̄ values, thus requiring no additional experimental time, (2) acquisition times in the critical detection dimension can be as long as necessary and (3) the signs obtained can be used to cross-validate those from other approaches.

Original languageEnglish (US)
Pages (from-to)135-141
Number of pages7
JournalJournal of Biomolecular NMR
Volume47
Issue number2
DOIs
StatePublished - Jun 2010

Fingerprint

Chemical shift
Excited states
Structural analysis
Ion exchange
Proteins
Experiments
Nuclear magnetic resonance
Availability
Spectroscopy
Thermodynamics
Magnetic fields
Kinetics
Magnetic Fields
Spectrum Analysis

Keywords

  • Chemical exchange
  • Chemical shifts
  • Excited states
  • HMQC
  • HSQC

ASJC Scopus subject areas

  • Spectroscopy
  • Biochemistry

Cite this

A simple method for measuring signs of 1HN chemical shift differences between ground and excited protein states. / Bouvignies, Guillaume; Korzhnev, Dmitry M.; Neudecker, Philipp; Hansen, D. Flemming; Cordes, Matthew Hj; Kay, Lewis E.

In: Journal of Biomolecular NMR, Vol. 47, No. 2, 06.2010, p. 135-141.

Research output: Contribution to journalArticle

Bouvignies, Guillaume ; Korzhnev, Dmitry M. ; Neudecker, Philipp ; Hansen, D. Flemming ; Cordes, Matthew Hj ; Kay, Lewis E. / A simple method for measuring signs of 1HN chemical shift differences between ground and excited protein states. In: Journal of Biomolecular NMR. 2010 ; Vol. 47, No. 2. pp. 135-141.
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