Among-environment heteroscedasticity and the estimation and testing of genetic correlation

Pierre Dutilleul, Yves Carriere

Research output: Contribution to journalArticle

9 Citations (Scopus)

Abstract

The genetic correlation between a character in two environments is of considerable interest in the context of plant and animal breeding for the prediction of evolutionary trajectories and for the evaluation of the amount of genetic variance maintained at equilibrium in subdivided populations. The two-way analysis of variance with genotype and environment as crossed factors is the usual basis for estimating this genetic correlation. In plasticity experiments, the genetic variance can differ widely between environments, for instance when the variance component associated with the genotype-environment interaction is not constant over environments. When this is the case, the assumption of homoscedasticity is violated, and the ANOVA method tends to underestimate the absolute value of the genetic correlation. To solve this problem, a variance-stabilizing transformation previously applied in a multivariate ANOVA context was developed. This development resulted in a new procedure (method 3), in which the genetic correlation is estimated from the transformed data (i.e. after among-environment heteroscedasticity is removed, while the within-environment means are maintained). In a simulation study and an analysis of Chlamydomonas reinhardtii growth rate data, we compared method 3 with two existing methods in which the genetic correlation is estimated from the raw data. Method 1 uses one 'global' variance component associated with the genotype-environment interaction, and method 2 uses two variance components associated with the genotype and obtained from one-way ANOVAS conducted separately in the two environments. Under increasing among-environment heteroscedasticity, method 1 produces increasingly biased genetic correlation estimates, whereas method 3 almost consistently provides accurate estimates; the performance of method 2 is intermediate, with more estimates out of range or indeterminate. This is the first demonstration that a variance-stabilizing transformation of the data removes the bias in the estimation of genetic correlation caused by among-environment heteroscedasticity, while allowing valid statistical testing in an ANOVA-based approach.

Original languageEnglish (US)
Pages (from-to)403-413
Number of pages11
JournalHeredity
Volume80
Issue number4
StatePublished - 1998
Externally publishedYes

Fingerprint

heteroskedasticity
Genetic Testing
genetic correlation
testing
analysis of variance
Analysis of Variance
Genotype
genotype-environment interaction
methodology
genetic variance
genotype
animal breeding
Chlamydomonas reinhardtii
plant breeding
trajectories

Keywords

  • Among-environment heteroscedasticity
  • Genetic correlation
  • Phenotypic plasticity
  • Variance-stabilizing transformation

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Genetics
  • Genetics(clinical)

Cite this

Among-environment heteroscedasticity and the estimation and testing of genetic correlation. / Dutilleul, Pierre; Carriere, Yves.

In: Heredity, Vol. 80, No. 4, 1998, p. 403-413.

Research output: Contribution to journalArticle

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