An interpreted language implementation of the Vaganov–Shashkin tree-ring proxy system model

Kevin J. Anchukaitis, Michael N. Evans, Malcolm K. Hughes, Eugene A. Vaganov

Research output: Contribution to journalArticlepeer-review

12 Scopus citations

Abstract

We describe the implementation of the Vaganov–Shashkin tree-ring growth model (VSM) in MATLAB. VSM, originally written in Fortran, mimics subdaily and daily resolution processes of cambial growth as a function of soil moisture, air temperature, and insolation, with environmental forcing modeled as the principle of limiting factors. The re-implementation in a high level interpreted language, while sacrificing speed, provides opportunities to systematically evaluate model parameters, generate large ensembles of simulated tree-ring chronologies, and embed proxy system modeling within data assimilation approaches to climate reconstruction. We provide a versioned code repository and examples of model applications which permit process-level understanding of tree ring width variations in response to environmental variations and boundary conditions.

Original languageEnglish (US)
Article number125677
JournalDendrochronologia
Volume60
DOIs
StatePublished - Apr 2020

Keywords

  • Cambium
  • Dendroclimatology
  • MATLAB
  • Paleoclimate
  • Proxy systems modeling
  • Tree-ring
  • Xylogenesis

ASJC Scopus subject areas

  • Ecology
  • Plant Science

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