Ancient angiosperm hexaploidy meets ancestral eudicot gene order

Chunfang Zheng, Victor A. Albert, Eric H Lyons, David Sankoff

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Abstract

We propose a protocol for reconstructing and analyzing the post-polyploidization ancestor of a set of genomes. Our method, applied to the post-hexaploid ancestor of six core eudicot flowering plants, reconstructs ancestral gene order, based on orthologs obtained for each pair of data genomes, harmonized into disjoint ortholog sets for multiple genomes.

Original languageEnglish (US)
Title of host publication2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012
DOIs
StatePublished - 2012
Event2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012 - Las Vegas, NV, United States
Duration: Feb 23 2012Feb 25 2012

Other

Other2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012
CountryUnited States
CityLas Vegas, NV
Period2/23/122/25/12

Fingerprint

Genome
Genes
Gene
Flowering
Disjoint

Keywords

  • comparative genomics
  • genome rearrangement
  • phylogeny
  • plant genomes

ASJC Scopus subject areas

  • Biomedical Engineering
  • Applied Mathematics

Cite this

Zheng, C., Albert, V. A., Lyons, E. H., & Sankoff, D. (2012). Ancient angiosperm hexaploidy meets ancestral eudicot gene order. In 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012 [6182649] https://doi.org/10.1109/ICCABS.2012.6182649

Ancient angiosperm hexaploidy meets ancestral eudicot gene order. / Zheng, Chunfang; Albert, Victor A.; Lyons, Eric H; Sankoff, David.

2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012. 2012. 6182649.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Zheng, C, Albert, VA, Lyons, EH & Sankoff, D 2012, Ancient angiosperm hexaploidy meets ancestral eudicot gene order. in 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012., 6182649, 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012, Las Vegas, NV, United States, 2/23/12. https://doi.org/10.1109/ICCABS.2012.6182649
Zheng C, Albert VA, Lyons EH, Sankoff D. Ancient angiosperm hexaploidy meets ancestral eudicot gene order. In 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012. 2012. 6182649 https://doi.org/10.1109/ICCABS.2012.6182649
Zheng, Chunfang ; Albert, Victor A. ; Lyons, Eric H ; Sankoff, David. / Ancient angiosperm hexaploidy meets ancestral eudicot gene order. 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012. 2012.
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