Assessing Fungal Community Structure from Mineral Surfaces in Kartchner Caverns Using Multiplexed 454 Pyrosequencing

Michael Joe Vaughan, Will Nelson, Carol Soderlund, Raina Margaret Maier, Barry M Pryor

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Research on the distribution and structure of fungal communities in caves is lacking. Kartchner Caverns is a wet and mineralogically diverse carbonate cave located in an escarpment of Mississippian Escabrosa limestone in the Whetstone Mountains, Arizona, USA. Fungal diversity from speleothem and rock wall surfaces was examined with 454 FLX Titanium sequencing technology using the Internal Transcribed Spacer 1 as a fungal barcode marker. Fungal diversity was estimated and compared between speleothem and rock wall surfaces, and its variation with distance from the natural entrance of the cave was quantified. Effects of environmental factors and nutrient concentrations in speleothem drip water at different sample sites on fungal diversity were also examined. Sequencing revealed 2,219 fungal operational taxonomic units (OTUs) at the 95 % similarity level. Speleothems supported a higher fungal richness and diversity than rock walls. However, community membership and the taxonomic distribution of fungal OTUs at the class level did not differ significantly between speleothems and rock walls. Both OTU richness and diversity decreased significantly with increasing distance from the natural cave entrance. Community membership and taxonomic distribution of fungal OTUs also differed significantly between the sampling sites closest to the entrance and those furthest away. There was no significant effect of temperature, CO<inf>2</inf> concentration, or drip water nutrient concentration on fungal community structure on either speleothems or rock walls. Together, these results suggest that proximity to the natural entrance is a critical factor in determining fungal community structure on mineral surfaces in Kartchner Caverns.

Original languageEnglish (US)
Pages (from-to)175-187
Number of pages13
JournalMicrobial Ecology
Volume70
Issue number1
DOIs
StatePublished - Jul 28 2015

Fingerprint

speleothem
fungal communities
cavern
wall rock
community structure
caves
rocks
minerals
cave
mineral
nutrient content
titanium
barcoding
limestone
nutrient
internal transcribed spacers
escarpment
carbonates
water
mountains

Keywords

  • 454 sequencing
  • Cave biology
  • Cave microbiology
  • Community structure
  • Fungal ecology
  • Speleology

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Ecology
  • Soil Science

Cite this

Assessing Fungal Community Structure from Mineral Surfaces in Kartchner Caverns Using Multiplexed 454 Pyrosequencing. / Vaughan, Michael Joe; Nelson, Will; Soderlund, Carol; Maier, Raina Margaret; Pryor, Barry M.

In: Microbial Ecology, Vol. 70, No. 1, 28.07.2015, p. 175-187.

Research output: Contribution to journalArticle

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