Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf.

Z. N. Yang, X. R. Ye, S. Choi, J. Molina, F. Moonan, Rod A Wing, M. L. Roose, T. E. Mirkov

Research output: Contribution to journalArticle

34 Citations (Scopus)

Abstract

The citrus tristeza virus resistance gene (Ctv) is a single dominant gene in Poncirus trifoliata, a sexually compatible relative of citrus. To clone this gene, a bacterial artificial chromosome (BAC) library has been constructed from an individual plant that was homozygous for Ctv. This library contains 45 696 clones with an average insert size of 80 kb, corresponding to 9.6 genome equivalents. Screening of the BAC library with five chloroplast DNA probes indicated that 0.58% of the BAC clones contained chloroplast-derived inserts. The chromosome walk across the Ctv locus was initiated using three closely linked genetic markers: C19, AD8, and Z16. The walk has been completed and a contig of ca. 1.2 Mb was constructed. Based on new data, the genetic map in the Ctv region was revised, with Ctv being located between AD8-Z16 and C19 at distances of 1.2 and 0.6 cM, respectively. Utilizing DNA fragments isolated from the contig as RFLP markers, the Ctv locus was further mapped to a region of ca. 300 kb. This contig contains several putative disease-resistance genes similar to the rice Xa21 gene, the tomato Cf-2 gene, and the Arabidopsis thaliana RPS2 gene. This library will therefore allow cloning of Ctv and other putative disease-resistance genes.

Original languageEnglish (US)
Pages (from-to)382-393
Number of pages12
JournalGenome
Volume44
Issue number3
DOIs
StatePublished - 2001
Externally publishedYes

Fingerprint

Poncirus
Citrus tristeza virus
Bacterial Artificial Chromosomes
Poncirus trifoliata
bacterial artificial chromosomes
Citrus
Viruses
loci
Genes
genes
Disease Resistance
Clone Cells
clones
Libraries
disease resistance
Chloroplast DNA
Dominant Genes
DNA probes
DNA Probes
dominant genes

Keywords

  • Chromosome walk
  • Citrus tristeza virus
  • Poncirus
  • Resistance gene

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Biotechnology
  • Genetics
  • Genetics(clinical)

Cite this

Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf. / Yang, Z. N.; Ye, X. R.; Choi, S.; Molina, J.; Moonan, F.; Wing, Rod A; Roose, M. L.; Mirkov, T. E.

In: Genome, Vol. 44, No. 3, 2001, p. 382-393.

Research output: Contribution to journalArticle

Yang, Z. N. ; Ye, X. R. ; Choi, S. ; Molina, J. ; Moonan, F. ; Wing, Rod A ; Roose, M. L. ; Mirkov, T. E. / Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf. In: Genome. 2001 ; Vol. 44, No. 3. pp. 382-393.
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abstract = "The citrus tristeza virus resistance gene (Ctv) is a single dominant gene in Poncirus trifoliata, a sexually compatible relative of citrus. To clone this gene, a bacterial artificial chromosome (BAC) library has been constructed from an individual plant that was homozygous for Ctv. This library contains 45 696 clones with an average insert size of 80 kb, corresponding to 9.6 genome equivalents. Screening of the BAC library with five chloroplast DNA probes indicated that 0.58{\%} of the BAC clones contained chloroplast-derived inserts. The chromosome walk across the Ctv locus was initiated using three closely linked genetic markers: C19, AD8, and Z16. The walk has been completed and a contig of ca. 1.2 Mb was constructed. Based on new data, the genetic map in the Ctv region was revised, with Ctv being located between AD8-Z16 and C19 at distances of 1.2 and 0.6 cM, respectively. Utilizing DNA fragments isolated from the contig as RFLP markers, the Ctv locus was further mapped to a region of ca. 300 kb. This contig contains several putative disease-resistance genes similar to the rice Xa21 gene, the tomato Cf-2 gene, and the Arabidopsis thaliana RPS2 gene. This library will therefore allow cloning of Ctv and other putative disease-resistance genes.",
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