Construction of BAC libraries from two apomictic grasses to study the microcolinearity of their apospory-specific genomic regions

D. Roche, J. A. Conner, M. A. Budiman, D. Frisch, Rod A Wing, W. W. Hanna, P. Ozias-Akins

Research output: Contribution to journalArticle

31 Citations (Scopus)

Abstract

We have constructed bacterial artificial chromosome (BAC) libraries from two grass species that reproduce by apospory, a form of gametophync apomixis. The library of an apomictic polyhaploid genotype (line MS228-20, with a 2C genome size of approximately 4,500 Mbp) derived from a cross between the obligate apomict, Pennisetum squamulatum, and pearl millet (P. glaucum) comprises 118,272 clones with an average insert size of 82 kb. The library of buffelgrass (Cenchrus ciliaris, apomictic line B-12-9, with a 2C genome size of approximately 3,000 Mbp) contains 68,736 clones with an average insert size of 109 kb. Based on the genome sizes of these two lines and correcting for the number for false-positive and organellar clones, library coverages were found to be 3.7 and 4.8 haploid genome equivalents for MS 228-20 and B12-9, respectively. Both libraries were screened by hybridization with six SCARs (sequence-characterized amplified regions), whose tight linkage in a single apospory-specific genomic region had been previously demonstrated in both species. Analysis of these BAC clones indicated that some of the SCAR markers are actually amplifying duplicated regions linked in coupling in both genomes and that restriction enzyme mapping will be necessary to sort out the duplications.

Original languageEnglish (US)
Pages (from-to)804-812
Number of pages9
JournalTheoretical And Applied Genetics
Volume104
Issue number5
DOIs
StatePublished - 2002
Externally publishedYes

Fingerprint

Bacterial Artificial Chromosomes
bacterial artificial chromosomes
apomixis
Poaceae
Genome Size
Libraries
Clone Cells
Pennisetum
grasses
genomics
genome
clones
Cenchrus
Pennisetum glaucum
Apomixis
Genome
Pennisetum squamulatum
Restriction Mapping
Haploidy
Cenchrus ciliaris

Keywords

  • Apomixis
  • Apospory
  • BAC library
  • Colinearity
  • Pennisetum

ASJC Scopus subject areas

  • Agronomy and Crop Science
  • Horticulture
  • Plant Science
  • Genetics
  • Genetics(clinical)

Cite this

Construction of BAC libraries from two apomictic grasses to study the microcolinearity of their apospory-specific genomic regions. / Roche, D.; Conner, J. A.; Budiman, M. A.; Frisch, D.; Wing, Rod A; Hanna, W. W.; Ozias-Akins, P.

In: Theoretical And Applied Genetics, Vol. 104, No. 5, 2002, p. 804-812.

Research output: Contribution to journalArticle

Roche, D. ; Conner, J. A. ; Budiman, M. A. ; Frisch, D. ; Wing, Rod A ; Hanna, W. W. ; Ozias-Akins, P. / Construction of BAC libraries from two apomictic grasses to study the microcolinearity of their apospory-specific genomic regions. In: Theoretical And Applied Genetics. 2002 ; Vol. 104, No. 5. pp. 804-812.
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