Evidence for novel genetic loci associated with metabolic traits in Yup'ik people

Stella Aslibekyan, Laura Kelly Vaughan, Howard W. Wiener, Dominick J. Lemas, Yann C Klimentidis, Peter J. Havel, Kimber L. Stanhope, Diane M. O'brien, Scarlett E. Hopkins, Bert B. Boyer, Hemant K. Tiwari

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

Objectives: To identify genomic regions associated with fasting plasma lipid profiles, insulin, glucose, and glycosylated hemoglobin in a Yup'ik study population, and to evaluate whether the observed associations between genetic factors and metabolic traits were modified by dietary intake of marine derived omega-3 polyunsaturated acids (n-3 PUFA). Methods: A genome-wide linkage scan was conducted among 982 participants of the Center for Alaska Native Health Research study. n-3 PUFA intake was estimated using the nitrogen stable isotope ratio (δ15N) of erythrocytes. All genotyped SNPs located within genomic regions with LOD scores>2 were subsequently tested for individual SNP associations with metabolic traits using linear models that account for familial correlation as well as age, sex, community group, and n-3 PUFA intake. Separate linear models were fit to evaluate interactions between the genotype of interest and n-3 PUFA intake. Results: We identified several chromosomal regions linked to serum apolipoprotein A2, high density lipoprotein-, low density lipoprotein-, and total cholesterol, insulin, and glycosylated hemoglobin. Genetic variants found to be associated with total cholesterol mapped to a region containing previously validated lipid loci on chromosome 19, and additional novel peaks of biological interest were identified at 11q12.2-11q13.2. We did not observe any significant interactions between n-3 PUFA intake, genotypes, and metabolic traits. Conclusions: We have completed a whole genome linkage scan for metabolic traits in Native Alaskans, confirming previously identified loci, and offering preliminary evidence of novel loci implicated in chronic disease pathogenesis in this population.

Original languageEnglish (US)
Pages (from-to)673-680
Number of pages8
JournalAmerican Journal of Human Biology
Volume25
Issue number5
DOIs
StatePublished - Sep 2013

Fingerprint

Genetic Loci
Omega-3 Fatty Acids
Alaska Natives
loci
linkage (genetics)
hemoglobin
insulin
linear model
linear models
cholesterol
evidence
genomics
Glycosylated Hemoglobin A
apolipoproteins
genotype
genome
high density lipoprotein
lipid
Single Nucleotide Polymorphism
low density lipoprotein

ASJC Scopus subject areas

  • Anthropology
  • Anatomy
  • Genetics
  • Ecology, Evolution, Behavior and Systematics

Cite this

Aslibekyan, S., Vaughan, L. K., Wiener, H. W., Lemas, D. J., Klimentidis, Y. C., Havel, P. J., ... Tiwari, H. K. (2013). Evidence for novel genetic loci associated with metabolic traits in Yup'ik people. American Journal of Human Biology, 25(5), 673-680. https://doi.org/10.1002/ajhb.22429

Evidence for novel genetic loci associated with metabolic traits in Yup'ik people. / Aslibekyan, Stella; Vaughan, Laura Kelly; Wiener, Howard W.; Lemas, Dominick J.; Klimentidis, Yann C; Havel, Peter J.; Stanhope, Kimber L.; O'brien, Diane M.; Hopkins, Scarlett E.; Boyer, Bert B.; Tiwari, Hemant K.

In: American Journal of Human Biology, Vol. 25, No. 5, 09.2013, p. 673-680.

Research output: Contribution to journalArticle

Aslibekyan, S, Vaughan, LK, Wiener, HW, Lemas, DJ, Klimentidis, YC, Havel, PJ, Stanhope, KL, O'brien, DM, Hopkins, SE, Boyer, BB & Tiwari, HK 2013, 'Evidence for novel genetic loci associated with metabolic traits in Yup'ik people', American Journal of Human Biology, vol. 25, no. 5, pp. 673-680. https://doi.org/10.1002/ajhb.22429
Aslibekyan, Stella ; Vaughan, Laura Kelly ; Wiener, Howard W. ; Lemas, Dominick J. ; Klimentidis, Yann C ; Havel, Peter J. ; Stanhope, Kimber L. ; O'brien, Diane M. ; Hopkins, Scarlett E. ; Boyer, Bert B. ; Tiwari, Hemant K. / Evidence for novel genetic loci associated with metabolic traits in Yup'ik people. In: American Journal of Human Biology. 2013 ; Vol. 25, No. 5. pp. 673-680.
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