Genetic diversification of penaeid shrimp infectious myonecrosis virus between Indonesia and Brazil

Sidrotun Naim, Judith K Brown, Max L. Nibert

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Infectious myonecrosis virus (IMNV) is a pathogen of penaeid shrimp, most notably the whiteleg shrimp Litopenaeus vannamei. First discovered in L. vannamei from Brazilian aquaculture farms in 2003, IMNV was additionally confirmed in L. vannamei from Indonesian farms in 2006 and has since been found in numerous provinces there. Only two complete sequences of IMNV strains have been reported to date, one strain from the Brazilian state of Piauí collected in 2003 and another from the Indonesian province of East Java collected in 2006. In this study, we determined the complete sequences of two additional Indonesian strains, one from Lampung province collected in 2011 and another from East Java province collected in 2012. We also determined partial sequences for six other strains to enhance phylogenetic comparisons, which have heretofore been limited by the small number of reported sequences, including only one for an Indonesian strain. The new results demonstrate clear genetic diversification of IMNV between Indonesia and Brazil, as well as within Indonesia. Analyses of conserved sequence motifs suggest a revised RNA pseudoknot prediction for ribosomal frameshifting.

Original languageEnglish (US)
Pages (from-to)97-105
Number of pages9
JournalVirus Research
Volume189
DOIs
StatePublished - Aug 30 2014

Fingerprint

Penaeidae
Indonesia
Brazil
Viruses
Ribosomal Frameshifting
Aquaculture
Conserved Sequence
RNA
Farms

Keywords

  • 2A-like motif
  • Arthropod virus
  • DsRNA virus
  • Ribosomal frameshifting
  • Shrimp virus
  • Totiviridae

ASJC Scopus subject areas

  • Virology
  • Infectious Diseases
  • Cancer Research
  • Medicine(all)

Cite this

Genetic diversification of penaeid shrimp infectious myonecrosis virus between Indonesia and Brazil. / Naim, Sidrotun; Brown, Judith K; Nibert, Max L.

In: Virus Research, Vol. 189, 30.08.2014, p. 97-105.

Research output: Contribution to journalArticle

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