Global foot-and-mouth disease surveillance using bioportal

Mark Thurmond, Andrés Perez, Chunju Tseng, Hsinchun Chen, Dajun Zeng

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Abstract

The paper presents a description of the FMD BioPortal biosurveillance system (http://fmd.ucdavis.edu/bioportal/) that is currently operating to capture, analyze, and disseminate global data on foot-and-mouth (FMD) disease. The FMD BioPortal makes available to users world-wide FMD-related data from the Institute for Animal Health at Pirbright, England. The system's tools include those for tabulating and graphing data, performing spatio-temporal cluster analysis of outbreak cases of FMD, and analyzing genomic changes in FMD viruses. The FMD BioPortal also includes the FMD News (http://fmd.ucdavis. edu/index.php?id=1), which is a near real time web search to identify and capture FMD-related news items appearing worldwide. Major systems components include a communication backbone for secure, real-time data transfer, a data analysis module that can run analytical programs to assess spatial-temporal clustering, and an interactive visualization tool for integrated analysis and display of epidemiological and genomic data.

Original languageEnglish (US)
Title of host publicationLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Pages169-179
Number of pages11
Volume4506 LNCS
StatePublished - 2007
Event2nd NSF BioSurveillance Workshop, BioSurveillance 2007 - New Brunswick, NJ, United States
Duration: May 22 2007May 22 2007

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume4506 LNCS
ISSN (Print)03029743
ISSN (Electronic)16113349

Other

Other2nd NSF BioSurveillance Workshop, BioSurveillance 2007
CountryUnited States
CityNew Brunswick, NJ
Period5/22/075/22/07

Fingerprint

Foot-and-Mouth Disease
Surveillance
Genomics
Cluster Analysis
Biosurveillance
Cluster analysis
Data transfer
Viruses
Spatio-Temporal Analysis
Spatio-temporal Data
Animals
Visualization
Web Search
Display devices
Health
Data Transfer
Backbone
England
Virus
Disease Outbreaks

Keywords

  • BioPortal
  • Foot-and-mouth disease
  • Surveillance

ASJC Scopus subject areas

  • Computer Science(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Theoretical Computer Science

Cite this

Thurmond, M., Perez, A., Tseng, C., Chen, H., & Zeng, D. (2007). Global foot-and-mouth disease surveillance using bioportal. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 4506 LNCS, pp. 169-179). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 4506 LNCS).

Global foot-and-mouth disease surveillance using bioportal. / Thurmond, Mark; Perez, Andrés; Tseng, Chunju; Chen, Hsinchun; Zeng, Dajun.

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 4506 LNCS 2007. p. 169-179 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 4506 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Thurmond, M, Perez, A, Tseng, C, Chen, H & Zeng, D 2007, Global foot-and-mouth disease surveillance using bioportal. in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). vol. 4506 LNCS, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 4506 LNCS, pp. 169-179, 2nd NSF BioSurveillance Workshop, BioSurveillance 2007, New Brunswick, NJ, United States, 5/22/07.
Thurmond M, Perez A, Tseng C, Chen H, Zeng D. Global foot-and-mouth disease surveillance using bioportal. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 4506 LNCS. 2007. p. 169-179. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
Thurmond, Mark ; Perez, Andrés ; Tseng, Chunju ; Chen, Hsinchun ; Zeng, Dajun. / Global foot-and-mouth disease surveillance using bioportal. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 4506 LNCS 2007. pp. 169-179 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
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