In-depth view of structure, activity, and evolution of rice chromosome 10

Yeisoo Yu, T. Rambo, J. Currie, C. Saski, H. R. Kim, K. Collura, S. Thompson, J. Simmons, T. J. Yang, G. Nah, A. J. Patel, S. Thurmond, D. Henry, R. Oates, M. Palmer, G. Pries, J. Gibson, H. Anderson, M. Paradkar, L. Crane & 84 others J. Dale, M. B. Carver, T. Wood, D. Frisch, F. Engler, C. Soderlund, L. E. Palmer, L. Tetylman, L. Nascimento, M. de la Bastide, L. Spiegel, D. Ware, A. O'Shaughnessy, S. Dike, N. Dedhia, R. Preston, E. Huang, K. Ferraro, K. Kuit, B. Miller, T. Zutavern, F. Katzenberger, S. Muller, V. Balija, R. A. Martienssen, L. Stein, P. Minx, D. Johnson, H. Cordum, E. Mardis, Z. Cheng, J. Jiang, R. Wilson, W. R. McCombie, Rod A Wing, Q. Yuan, S. Ouyang, J. Liu, K. M. Jones, K. Gansberger, K. Moffat, J. Hill, T. Tsitrin, L. Overton, J. Bera, M. Kim, S. Jin, L. Tallon, A. Ciecko, G. Pai, S. van Aken, T. Utterback, S. Reidmuller, J. Bormann, T. Feldblyum, J. Hsiao, V. Zismann, S. Blunt, A. de Vazeilles, T. Shaffer, H. Koo, B. Suh, Q. Yang, B. Haas, J. Peterson, M. Pertea, N. Volfovsky, J. Wortman, O. White, S. L. Salzberg, C. M. Fraser, C. Robin Buell, J. Messing, R. Song, G. Fuks, V. Llaca, S. Kovchak, S. Young, J. E. Bowers, A. H. Paterson, M. A. Johns, L. Mao, H. Pan, R. A. Dean

Research output: Contribution to journalArticle

209 Citations (Scopus)

Abstract

Rice is the world's most important food crop and a model for cereal research. At 430 megabases in size, its genome is the most compact of the cereals. We report the sequence of chromosome 10, the smallest of the 12 rice chromosomes (22.4 megabases), which contains 3471 genes. Chromosome 10 contains considerable heterochromatin with an enrichment of repetitive elements on 10S and an enrichment of expressed genes on 10L. Multiple insertions from organellar genomes were detected. Collinearity was apparent between rice chromosome 10 and sorghum and maize. Comparison between the draft and finished sequence demonstrates the importance of finished sequence.

Original languageEnglish (US)
Pages (from-to)1566-1569
Number of pages4
JournalScience
Volume300
Issue number5625
DOIs
StatePublished - Jun 6 2003

Fingerprint

Chromosomes, Human, Pair 10
Genome Size
Chromosomes, Human, Pair 12
Sorghum
Heterochromatin
Genes
Zea mays
Genome
Food
Research
Oryza
Edible Grain

ASJC Scopus subject areas

  • General

Cite this

Yu, Y., Rambo, T., Currie, J., Saski, C., Kim, H. R., Collura, K., ... Dean, R. A. (2003). In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 300(5625), 1566-1569. https://doi.org/10.1126/science.1083523

In-depth view of structure, activity, and evolution of rice chromosome 10. / Yu, Yeisoo; Rambo, T.; Currie, J.; Saski, C.; Kim, H. R.; Collura, K.; Thompson, S.; Simmons, J.; Yang, T. J.; Nah, G.; Patel, A. J.; Thurmond, S.; Henry, D.; Oates, R.; Palmer, M.; Pries, G.; Gibson, J.; Anderson, H.; Paradkar, M.; Crane, L.; Dale, J.; Carver, M. B.; Wood, T.; Frisch, D.; Engler, F.; Soderlund, C.; Palmer, L. E.; Tetylman, L.; Nascimento, L.; de la Bastide, M.; Spiegel, L.; Ware, D.; O'Shaughnessy, A.; Dike, S.; Dedhia, N.; Preston, R.; Huang, E.; Ferraro, K.; Kuit, K.; Miller, B.; Zutavern, T.; Katzenberger, F.; Muller, S.; Balija, V.; Martienssen, R. A.; Stein, L.; Minx, P.; Johnson, D.; Cordum, H.; Mardis, E.; Cheng, Z.; Jiang, J.; Wilson, R.; McCombie, W. R.; Wing, Rod A; Yuan, Q.; Ouyang, S.; Liu, J.; Jones, K. M.; Gansberger, K.; Moffat, K.; Hill, J.; Tsitrin, T.; Overton, L.; Bera, J.; Kim, M.; Jin, S.; Tallon, L.; Ciecko, A.; Pai, G.; van Aken, S.; Utterback, T.; Reidmuller, S.; Bormann, J.; Feldblyum, T.; Hsiao, J.; Zismann, V.; Blunt, S.; de Vazeilles, A.; Shaffer, T.; Koo, H.; Suh, B.; Yang, Q.; Haas, B.; Peterson, J.; Pertea, M.; Volfovsky, N.; Wortman, J.; White, O.; Salzberg, S. L.; Fraser, C. M.; Robin Buell, C.; Messing, J.; Song, R.; Fuks, G.; Llaca, V.; Kovchak, S.; Young, S.; Bowers, J. E.; Paterson, A. H.; Johns, M. A.; Mao, L.; Pan, H.; Dean, R. A.

In: Science, Vol. 300, No. 5625, 06.06.2003, p. 1566-1569.

Research output: Contribution to journalArticle

Yu, Y, Rambo, T, Currie, J, Saski, C, Kim, HR, Collura, K, Thompson, S, Simmons, J, Yang, TJ, Nah, G, Patel, AJ, Thurmond, S, Henry, D, Oates, R, Palmer, M, Pries, G, Gibson, J, Anderson, H, Paradkar, M, Crane, L, Dale, J, Carver, MB, Wood, T, Frisch, D, Engler, F, Soderlund, C, Palmer, LE, Tetylman, L, Nascimento, L, de la Bastide, M, Spiegel, L, Ware, D, O'Shaughnessy, A, Dike, S, Dedhia, N, Preston, R, Huang, E, Ferraro, K, Kuit, K, Miller, B, Zutavern, T, Katzenberger, F, Muller, S, Balija, V, Martienssen, RA, Stein, L, Minx, P, Johnson, D, Cordum, H, Mardis, E, Cheng, Z, Jiang, J, Wilson, R, McCombie, WR, Wing, RA, Yuan, Q, Ouyang, S, Liu, J, Jones, KM, Gansberger, K, Moffat, K, Hill, J, Tsitrin, T, Overton, L, Bera, J, Kim, M, Jin, S, Tallon, L, Ciecko, A, Pai, G, van Aken, S, Utterback, T, Reidmuller, S, Bormann, J, Feldblyum, T, Hsiao, J, Zismann, V, Blunt, S, de Vazeilles, A, Shaffer, T, Koo, H, Suh, B, Yang, Q, Haas, B, Peterson, J, Pertea, M, Volfovsky, N, Wortman, J, White, O, Salzberg, SL, Fraser, CM, Robin Buell, C, Messing, J, Song, R, Fuks, G, Llaca, V, Kovchak, S, Young, S, Bowers, JE, Paterson, AH, Johns, MA, Mao, L, Pan, H & Dean, RA 2003, 'In-depth view of structure, activity, and evolution of rice chromosome 10', Science, vol. 300, no. 5625, pp. 1566-1569. https://doi.org/10.1126/science.1083523
Yu Y, Rambo T, Currie J, Saski C, Kim HR, Collura K et al. In-depth view of structure, activity, and evolution of rice chromosome 10. Science. 2003 Jun 6;300(5625):1566-1569. https://doi.org/10.1126/science.1083523
Yu, Yeisoo ; Rambo, T. ; Currie, J. ; Saski, C. ; Kim, H. R. ; Collura, K. ; Thompson, S. ; Simmons, J. ; Yang, T. J. ; Nah, G. ; Patel, A. J. ; Thurmond, S. ; Henry, D. ; Oates, R. ; Palmer, M. ; Pries, G. ; Gibson, J. ; Anderson, H. ; Paradkar, M. ; Crane, L. ; Dale, J. ; Carver, M. B. ; Wood, T. ; Frisch, D. ; Engler, F. ; Soderlund, C. ; Palmer, L. E. ; Tetylman, L. ; Nascimento, L. ; de la Bastide, M. ; Spiegel, L. ; Ware, D. ; O'Shaughnessy, A. ; Dike, S. ; Dedhia, N. ; Preston, R. ; Huang, E. ; Ferraro, K. ; Kuit, K. ; Miller, B. ; Zutavern, T. ; Katzenberger, F. ; Muller, S. ; Balija, V. ; Martienssen, R. A. ; Stein, L. ; Minx, P. ; Johnson, D. ; Cordum, H. ; Mardis, E. ; Cheng, Z. ; Jiang, J. ; Wilson, R. ; McCombie, W. R. ; Wing, Rod A ; Yuan, Q. ; Ouyang, S. ; Liu, J. ; Jones, K. M. ; Gansberger, K. ; Moffat, K. ; Hill, J. ; Tsitrin, T. ; Overton, L. ; Bera, J. ; Kim, M. ; Jin, S. ; Tallon, L. ; Ciecko, A. ; Pai, G. ; van Aken, S. ; Utterback, T. ; Reidmuller, S. ; Bormann, J. ; Feldblyum, T. ; Hsiao, J. ; Zismann, V. ; Blunt, S. ; de Vazeilles, A. ; Shaffer, T. ; Koo, H. ; Suh, B. ; Yang, Q. ; Haas, B. ; Peterson, J. ; Pertea, M. ; Volfovsky, N. ; Wortman, J. ; White, O. ; Salzberg, S. L. ; Fraser, C. M. ; Robin Buell, C. ; Messing, J. ; Song, R. ; Fuks, G. ; Llaca, V. ; Kovchak, S. ; Young, S. ; Bowers, J. E. ; Paterson, A. H. ; Johns, M. A. ; Mao, L. ; Pan, H. ; Dean, R. A. / In-depth view of structure, activity, and evolution of rice chromosome 10. In: Science. 2003 ; Vol. 300, No. 5625. pp. 1566-1569.
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abstract = "Rice is the world's most important food crop and a model for cereal research. At 430 megabases in size, its genome is the most compact of the cereals. We report the sequence of chromosome 10, the smallest of the 12 rice chromosomes (22.4 megabases), which contains 3471 genes. Chromosome 10 contains considerable heterochromatin with an enrichment of repetitive elements on 10S and an enrichment of expressed genes on 10L. Multiple insertions from organellar genomes were detected. Collinearity was apparent between rice chromosome 10 and sorghum and maize. Comparison between the draft and finished sequence demonstrates the importance of finished sequence.",
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TY - JOUR

T1 - In-depth view of structure, activity, and evolution of rice chromosome 10

AU - Yu, Yeisoo

AU - Rambo, T.

AU - Currie, J.

AU - Saski, C.

AU - Kim, H. R.

AU - Collura, K.

AU - Thompson, S.

AU - Simmons, J.

AU - Yang, T. J.

AU - Nah, G.

AU - Patel, A. J.

AU - Thurmond, S.

AU - Henry, D.

AU - Oates, R.

AU - Palmer, M.

AU - Pries, G.

AU - Gibson, J.

AU - Anderson, H.

AU - Paradkar, M.

AU - Crane, L.

AU - Dale, J.

AU - Carver, M. B.

AU - Wood, T.

AU - Frisch, D.

AU - Engler, F.

AU - Soderlund, C.

AU - Palmer, L. E.

AU - Tetylman, L.

AU - Nascimento, L.

AU - de la Bastide, M.

AU - Spiegel, L.

AU - Ware, D.

AU - O'Shaughnessy, A.

AU - Dike, S.

AU - Dedhia, N.

AU - Preston, R.

AU - Huang, E.

AU - Ferraro, K.

AU - Kuit, K.

AU - Miller, B.

AU - Zutavern, T.

AU - Katzenberger, F.

AU - Muller, S.

AU - Balija, V.

AU - Martienssen, R. A.

AU - Stein, L.

AU - Minx, P.

AU - Johnson, D.

AU - Cordum, H.

AU - Mardis, E.

AU - Cheng, Z.

AU - Jiang, J.

AU - Wilson, R.

AU - McCombie, W. R.

AU - Wing, Rod A

AU - Yuan, Q.

AU - Ouyang, S.

AU - Liu, J.

AU - Jones, K. M.

AU - Gansberger, K.

AU - Moffat, K.

AU - Hill, J.

AU - Tsitrin, T.

AU - Overton, L.

AU - Bera, J.

AU - Kim, M.

AU - Jin, S.

AU - Tallon, L.

AU - Ciecko, A.

AU - Pai, G.

AU - van Aken, S.

AU - Utterback, T.

AU - Reidmuller, S.

AU - Bormann, J.

AU - Feldblyum, T.

AU - Hsiao, J.

AU - Zismann, V.

AU - Blunt, S.

AU - de Vazeilles, A.

AU - Shaffer, T.

AU - Koo, H.

AU - Suh, B.

AU - Yang, Q.

AU - Haas, B.

AU - Peterson, J.

AU - Pertea, M.

AU - Volfovsky, N.

AU - Wortman, J.

AU - White, O.

AU - Salzberg, S. L.

AU - Fraser, C. M.

AU - Robin Buell, C.

AU - Messing, J.

AU - Song, R.

AU - Fuks, G.

AU - Llaca, V.

AU - Kovchak, S.

AU - Young, S.

AU - Bowers, J. E.

AU - Paterson, A. H.

AU - Johns, M. A.

AU - Mao, L.

AU - Pan, H.

AU - Dean, R. A.

PY - 2003/6/6

Y1 - 2003/6/6

N2 - Rice is the world's most important food crop and a model for cereal research. At 430 megabases in size, its genome is the most compact of the cereals. We report the sequence of chromosome 10, the smallest of the 12 rice chromosomes (22.4 megabases), which contains 3471 genes. Chromosome 10 contains considerable heterochromatin with an enrichment of repetitive elements on 10S and an enrichment of expressed genes on 10L. Multiple insertions from organellar genomes were detected. Collinearity was apparent between rice chromosome 10 and sorghum and maize. Comparison between the draft and finished sequence demonstrates the importance of finished sequence.

AB - Rice is the world's most important food crop and a model for cereal research. At 430 megabases in size, its genome is the most compact of the cereals. We report the sequence of chromosome 10, the smallest of the 12 rice chromosomes (22.4 megabases), which contains 3471 genes. Chromosome 10 contains considerable heterochromatin with an enrichment of repetitive elements on 10S and an enrichment of expressed genes on 10L. Multiple insertions from organellar genomes were detected. Collinearity was apparent between rice chromosome 10 and sorghum and maize. Comparison between the draft and finished sequence demonstrates the importance of finished sequence.

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U2 - 10.1126/science.1083523

DO - 10.1126/science.1083523

M3 - Article

VL - 300

SP - 1566

EP - 1569

JO - Science

JF - Science

SN - 0036-8075

IS - 5625

ER -