Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

Guangyi Fan, Yue Song, Liandong Yang, Xiaoyun Huang, Suyu Zhang, Mengqi Zhang, Xianwei Yang, Yue Chang, He Zhang, Yongxin Li, Shanshan Liu, Lili Yu, Jeffery Chu, Inge Seim, Chenguang Feng, Thomas J. Near, Rod A. Wing, Wen Wang, K. Kun Wan, Jing WangXun Xu, Huanming Yang, Xin Liu, Nansheng Chen, Shunping He

Research output: Contribution to journalArticlepeer-review

1 Scopus citations

Abstract

Background: With more than 30,000 species, fish-including bony, jawless, and cartilaginous fish-are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results: Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions: To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.

Original languageEnglish (US)
JournalGigaScience
Volume9
Issue number8
DOIs
StatePublished - Aug 1 2020
Externally publishedYes

Keywords

  • Evolution
  • Fish
  • Fish10K
  • Genome sequencing
  • Phylogenetics
  • StLFR

ASJC Scopus subject areas

  • Computer Science Applications
  • Health Informatics

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