Minimum information about an uncultivated virus genome (MIUVIG)

Simon Roux; Evelien M. Adriaenssens; Bas E. Dutilh; Eugene V. Koonin; Andrew M. Kropinski; Mart Krupovic; Jens H. Kuhn; Rob Lavigne; J. Rodney Brister; Arvind Varsani; Clara Amid; Ramy K. Aziz; Seth R. Bordenstein; Peer Bork; Mya Breitbart; Guy R. Cochrane; Rebecca A. Daly; Christelle Desnues; Melissa B. Duhaime; Joanne B. Emerson; François Enault; Jed A. Fuhrman; Pascal Hingamp; Philip Hugenholtz; Bonnie L. Hurwitz; Natalia N. Ivanova; Jessica M. Labonté; Kyung Bum Lee; Rex R. Malmstrom; Manuel Martinez-Garcia; Ilene Karsch Mizrachi; Hiroyuki Ogata; David Páez-Espino; Marie Agnès Petit; Catherine Putonti; Thomas Rattei; Alejandro Reyes; Francisco Rodriguez-Valera; Karyna Rosario; Lynn Schriml; Frederik Schulz; Grieg F. Steward; Matthew B. Sullivan; Shinichi Sunagawa; Curtis A. Suttle; Ben Temperton; Susannah G. Tringe; Rebecca Vega Thurber; Nicole S. Webster; Katrine L. Whiteson; Steven W. Wilhelm; K. Eric Wommack; Tanja Woyke; Kelly C. Wrighton; Pelin Yilmaz; Takashi Yoshida; Mark J. Young; Natalya Yutin; Lisa Zeigler Allen; Nikos C. Kyrpides; Emiley A. Eloe-Fadrosh

doi:10.1038/nbt.4306

Minimum information about an uncultivated virus genome (MIUVIG)

Simon Roux, Evelien M. Adriaenssens, Bas E. Dutilh, Eugene V. Koonin, Andrew M. Kropinski, Mart Krupovic, Jens H. Kuhn, Rob Lavigne, J. Rodney Brister, Arvind Varsani, Clara Amid, Ramy K. Aziz, Seth R. Bordenstein, Peer Bork, Mya Breitbart, Guy R. Cochrane, Rebecca A. Daly, Christelle Desnues, Melissa B. Duhaime, Joanne B. EmersonFrançois Enault, Jed A. Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L. Hurwitz, Natalia N. Ivanova, Jessica M. Labonté, Kyung Bum Lee, Rex R. Malmstrom, Manuel Martinez-Garcia, Ilene Karsch Mizrachi, Hiroyuki Ogata, David Páez-Espino, Marie Agnès Petit, Catherine Putonti, Thomas Rattei, Alejandro Reyes, Francisco Rodriguez-Valera, Karyna Rosario, Lynn Schriml, Frederik Schulz, Grieg F. Steward, Matthew B. Sullivan, Shinichi Sunagawa, Curtis A. Suttle, Ben Temperton, Susannah G. Tringe, Rebecca Vega Thurber, Nicole S. Webster, Katrine L. Whiteson, Steven W. Wilhelm, K. Eric Wommack, Tanja Woyke, Kelly C. Wrighton, Pelin Yilmaz, Takashi Yoshida, Mark J. Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C. Kyrpides, Emiley A. Eloe-Fadrosh

Research output: Contribution to journal › Article

37 Scopus citations

Abstract

We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.

Original language	English (US)
Pages (from-to)	29-37
Number of pages	9
Journal	Nature biotechnology
Volume	37
Issue number	1
DOIs	https://doi.org/10.1038/nbt.4306
State	Published - Jan 1 2019

ASJC Scopus subject areas

Biotechnology
Bioengineering
Applied Microbiology and Biotechnology
Molecular Medicine
Biomedical Engineering

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Roux, S., Adriaenssens, E. M., Dutilh, B. E., Koonin, E. V., Kropinski, A. M., Krupovic, M., Kuhn, J. H., Lavigne, R., Brister, J. R., Varsani, A., Amid, C., Aziz, R. K., Bordenstein, S. R., Bork, P., Breitbart, M., Cochrane, G. R., Daly, R. A., Desnues, C., Duhaime, M. B., ... Eloe-Fadrosh, E. A. (2019). Minimum information about an uncultivated virus genome (MIUVIG). Nature biotechnology, 37(1), 29-37. https://doi.org/10.1038/nbt.4306

Minimum information about an uncultivated virus genome (MIUVIG). / Roux, Simon; Adriaenssens, Evelien M.; Dutilh, Bas E.; Koonin, Eugene V.; Kropinski, Andrew M.; Krupovic, Mart; Kuhn, Jens H.; Lavigne, Rob; Brister, J. Rodney; Varsani, Arvind; Amid, Clara; Aziz, Ramy K.; Bordenstein, Seth R.; Bork, Peer; Breitbart, Mya; Cochrane, Guy R.; Daly, Rebecca A.; Desnues, Christelle; Duhaime, Melissa B.; Emerson, Joanne B.; Enault, François; Fuhrman, Jed A.; Hingamp, Pascal; Hugenholtz, Philip; Hurwitz, Bonnie L.; Ivanova, Natalia N.; Labonté, Jessica M.; Lee, Kyung Bum; Malmstrom, Rex R.; Martinez-Garcia, Manuel; Mizrachi, Ilene Karsch; Ogata, Hiroyuki; Páez-Espino, David; Petit, Marie Agnès; Putonti, Catherine; Rattei, Thomas; Reyes, Alejandro; Rodriguez-Valera, Francisco; Rosario, Karyna; Schriml, Lynn; Schulz, Frederik; Steward, Grieg F.; Sullivan, Matthew B.; Sunagawa, Shinichi; Suttle, Curtis A.; Temperton, Ben; Tringe, Susannah G.; Thurber, Rebecca Vega; Webster, Nicole S.; Whiteson, Katrine L.; Wilhelm, Steven W.; Wommack, K. Eric; Woyke, Tanja; Wrighton, Kelly C.; Yilmaz, Pelin; Yoshida, Takashi; Young, Mark J.; Yutin, Natalya; Allen, Lisa Zeigler; Kyrpides, Nikos C.; Eloe-Fadrosh, Emiley A.

In: Nature biotechnology, Vol. 37, No. 1, 01.01.2019, p. 29-37.

Research output: Contribution to journal › Article

Roux, S, Adriaenssens, EM, Dutilh, BE, Koonin, EV, Kropinski, AM, Krupovic, M, Kuhn, JH, Lavigne, R, Brister, JR, Varsani, A, Amid, C, Aziz, RK, Bordenstein, SR, Bork, P, Breitbart, M, Cochrane, GR, Daly, RA, Desnues, C, Duhaime, MB, Emerson, JB, Enault, F, Fuhrman, JA, Hingamp, P, Hugenholtz, P, Hurwitz, BL, Ivanova, NN, Labonté, JM, Lee, KB, Malmstrom, RR, Martinez-Garcia, M, Mizrachi, IK, Ogata, H, Páez-Espino, D, Petit, MA, Putonti, C, Rattei, T, Reyes, A, Rodriguez-Valera, F, Rosario, K, Schriml, L, Schulz, F, Steward, GF, Sullivan, MB, Sunagawa, S, Suttle, CA, Temperton, B, Tringe, SG, Thurber, RV, Webster, NS, Whiteson, KL, Wilhelm, SW, Wommack, KE, Woyke, T, Wrighton, KC, Yilmaz, P, Yoshida, T, Young, MJ, Yutin, N, Allen, LZ, Kyrpides, NC & Eloe-Fadrosh, EA 2019, 'Minimum information about an uncultivated virus genome (MIUVIG)', Nature biotechnology, vol. 37, no. 1, pp. 29-37. https://doi.org/10.1038/nbt.4306

Roux, Simon ; Adriaenssens, Evelien M. ; Dutilh, Bas E. ; Koonin, Eugene V. ; Kropinski, Andrew M. ; Krupovic, Mart ; Kuhn, Jens H. ; Lavigne, Rob ; Brister, J. Rodney ; Varsani, Arvind ; Amid, Clara ; Aziz, Ramy K. ; Bordenstein, Seth R. ; Bork, Peer ; Breitbart, Mya ; Cochrane, Guy R. ; Daly, Rebecca A. ; Desnues, Christelle ; Duhaime, Melissa B. ; Emerson, Joanne B. ; Enault, François ; Fuhrman, Jed A. ; Hingamp, Pascal ; Hugenholtz, Philip ; Hurwitz, Bonnie L. ; Ivanova, Natalia N. ; Labonté, Jessica M. ; Lee, Kyung Bum ; Malmstrom, Rex R. ; Martinez-Garcia, Manuel ; Mizrachi, Ilene Karsch ; Ogata, Hiroyuki ; Páez-Espino, David ; Petit, Marie Agnès ; Putonti, Catherine ; Rattei, Thomas ; Reyes, Alejandro ; Rodriguez-Valera, Francisco ; Rosario, Karyna ; Schriml, Lynn ; Schulz, Frederik ; Steward, Grieg F. ; Sullivan, Matthew B. ; Sunagawa, Shinichi ; Suttle, Curtis A. ; Temperton, Ben ; Tringe, Susannah G. ; Thurber, Rebecca Vega ; Webster, Nicole S. ; Whiteson, Katrine L. ; Wilhelm, Steven W. ; Wommack, K. Eric ; Woyke, Tanja ; Wrighton, Kelly C. ; Yilmaz, Pelin ; Yoshida, Takashi ; Young, Mark J. ; Yutin, Natalya ; Allen, Lisa Zeigler ; Kyrpides, Nikos C. ; Eloe-Fadrosh, Emiley A. / Minimum information about an uncultivated virus genome (MIUVIG). In: Nature biotechnology. 2019 ; Vol. 37, No. 1. pp. 29-37.

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abstract = "We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.",

author = "Simon Roux and Adriaenssens, {Evelien M.} and Dutilh, {Bas E.} and Koonin, {Eugene V.} and Kropinski, {Andrew M.} and Mart Krupovic and Kuhn, {Jens H.} and Rob Lavigne and Brister, {J. Rodney} and Arvind Varsani and Clara Amid and Aziz, {Ramy K.} and Bordenstein, {Seth R.} and Peer Bork and Mya Breitbart and Cochrane, {Guy R.} and Daly, {Rebecca A.} and Christelle Desnues and Duhaime, {Melissa B.} and Emerson, {Joanne B.} and Fran{\c c}ois Enault and Fuhrman, {Jed A.} and Pascal Hingamp and Philip Hugenholtz and Hurwitz, {Bonnie L.} and Ivanova, {Natalia N.} and Labont{\'e}, {Jessica M.} and Lee, {Kyung Bum} and Malmstrom, {Rex R.} and Manuel Martinez-Garcia and Mizrachi, {Ilene Karsch} and Hiroyuki Ogata and David P{\'a}ez-Espino and Petit, {Marie Agn{\`e}s} and Catherine Putonti and Thomas Rattei and Alejandro Reyes and Francisco Rodriguez-Valera and Karyna Rosario and Lynn Schriml and Frederik Schulz and Steward, {Grieg F.} and Sullivan, {Matthew B.} and Shinichi Sunagawa and Suttle, {Curtis A.} and Ben Temperton and Tringe, {Susannah G.} and Thurber, {Rebecca Vega} and Webster, {Nicole S.} and Whiteson, {Katrine L.} and Wilhelm, {Steven W.} and Wommack, {K. Eric} and Tanja Woyke and Wrighton, {Kelly C.} and Pelin Yilmaz and Takashi Yoshida and Young, {Mark J.} and Natalya Yutin and Allen, {Lisa Zeigler} and Kyrpides, {Nikos C.} and Eloe-Fadrosh, {Emiley A.}",

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AU - Roux, Simon

AU - Adriaenssens, Evelien M.

AU - Dutilh, Bas E.

AU - Koonin, Eugene V.

AU - Kropinski, Andrew M.

AU - Krupovic, Mart

AU - Kuhn, Jens H.

AU - Lavigne, Rob

AU - Brister, J. Rodney

AU - Varsani, Arvind

AU - Amid, Clara

AU - Aziz, Ramy K.

AU - Bordenstein, Seth R.

AU - Bork, Peer

AU - Breitbart, Mya

AU - Cochrane, Guy R.

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AU - Desnues, Christelle

AU - Duhaime, Melissa B.

AU - Emerson, Joanne B.

AU - Enault, François

AU - Fuhrman, Jed A.

AU - Hingamp, Pascal

AU - Hugenholtz, Philip

AU - Hurwitz, Bonnie L.

AU - Ivanova, Natalia N.

AU - Labonté, Jessica M.

AU - Lee, Kyung Bum

AU - Malmstrom, Rex R.

AU - Martinez-Garcia, Manuel

AU - Mizrachi, Ilene Karsch

AU - Ogata, Hiroyuki

AU - Páez-Espino, David

AU - Petit, Marie Agnès

AU - Putonti, Catherine

AU - Rattei, Thomas

AU - Reyes, Alejandro

AU - Rodriguez-Valera, Francisco

AU - Rosario, Karyna

AU - Schriml, Lynn

AU - Schulz, Frederik

AU - Steward, Grieg F.

AU - Sullivan, Matthew B.

AU - Sunagawa, Shinichi

AU - Suttle, Curtis A.

AU - Temperton, Ben

AU - Tringe, Susannah G.

AU - Thurber, Rebecca Vega

AU - Webster, Nicole S.

AU - Whiteson, Katrine L.

AU - Wilhelm, Steven W.

AU - Wommack, K. Eric

AU - Woyke, Tanja

AU - Wrighton, Kelly C.

AU - Yilmaz, Pelin

AU - Yoshida, Takashi

AU - Young, Mark J.

AU - Yutin, Natalya

AU - Allen, Lisa Zeigler

AU - Kyrpides, Nikos C.

AU - Eloe-Fadrosh, Emiley A.

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