MRI template and atlas toolbox for the C57BL/6J mouse brain

Lan Lin, Kewei Chen, Jonathan Valla, Jiping He, Eric M. Reiman, Jean-Philippe Galons, Beatrice Hauss-Wegrzyniak, Gene E Alexander

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Abstract

In order to compare brain-imaging measurements from different subjects, brain-mapping algorithms are commonly used to register individual brain onto a standardized brain atlas. In this study, SPM99 was used to linearly and nonlinearly coregister a spatially standardized T2-weighted template of C57BL/6J to the atlas by Paxinos and Franklin (2001), local accuracy of between atlas and template was evaluated, and a toolbox was developed. This study provides a foundation for the region of interest analysis for mouse brain images.

Original languageEnglish (US)
Title of host publication2nd International IEEE EMBS Conference on Neural Engineering
Pages6-8
Number of pages3
Volume2005
DOIs
StatePublished - 2005
Externally publishedYes
Event2nd International IEEE EMBS Conference on Neural Engineering, 2005 - Arlington, VA, United States
Duration: Mar 16 2005Mar 19 2005

Other

Other2nd International IEEE EMBS Conference on Neural Engineering, 2005
CountryUnited States
CityArlington, VA
Period3/16/053/19/05

Fingerprint

Magnetic resonance imaging
Brain
Brain mapping
Imaging techniques

ASJC Scopus subject areas

  • Engineering(all)

Cite this

Lin, L., Chen, K., Valla, J., He, J., Reiman, E. M., Galons, J-P., ... Alexander, G. E. (2005). MRI template and atlas toolbox for the C57BL/6J mouse brain. In 2nd International IEEE EMBS Conference on Neural Engineering (Vol. 2005, pp. 6-8). [1419537] https://doi.org/10.1109/CNE.2005.1419537

MRI template and atlas toolbox for the C57BL/6J mouse brain. / Lin, Lan; Chen, Kewei; Valla, Jonathan; He, Jiping; Reiman, Eric M.; Galons, Jean-Philippe; Hauss-Wegrzyniak, Beatrice; Alexander, Gene E.

2nd International IEEE EMBS Conference on Neural Engineering. Vol. 2005 2005. p. 6-8 1419537.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Lin, L, Chen, K, Valla, J, He, J, Reiman, EM, Galons, J-P, Hauss-Wegrzyniak, B & Alexander, GE 2005, MRI template and atlas toolbox for the C57BL/6J mouse brain. in 2nd International IEEE EMBS Conference on Neural Engineering. vol. 2005, 1419537, pp. 6-8, 2nd International IEEE EMBS Conference on Neural Engineering, 2005, Arlington, VA, United States, 3/16/05. https://doi.org/10.1109/CNE.2005.1419537
Lin L, Chen K, Valla J, He J, Reiman EM, Galons J-P et al. MRI template and atlas toolbox for the C57BL/6J mouse brain. In 2nd International IEEE EMBS Conference on Neural Engineering. Vol. 2005. 2005. p. 6-8. 1419537 https://doi.org/10.1109/CNE.2005.1419537
Lin, Lan ; Chen, Kewei ; Valla, Jonathan ; He, Jiping ; Reiman, Eric M. ; Galons, Jean-Philippe ; Hauss-Wegrzyniak, Beatrice ; Alexander, Gene E. / MRI template and atlas toolbox for the C57BL/6J mouse brain. 2nd International IEEE EMBS Conference on Neural Engineering. Vol. 2005 2005. pp. 6-8
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