MRI template and atlas toolbox for the C57BL/6J mouse brain

Lan Lin, Kewei Chen, Jonathan Valla, Jiping He, Eric M. Reiman, Jean Philippe Galons, Beatrice Hauss-Wegrzyniak, Gene E. Alexander

Research output: Contribution to conferencePaper

2 Scopus citations

Abstract

In order to compare brain-imaging measurements from different subjects, brain-mapping algorithms are commonly used to register individual brain onto a standardized brain atlas. In this study, SPM99 was used to linearly and nonlinearly coregister a spatially standardized T2-weighted template of C57BL/6J to the atlas by Paxinos and Franklin (2001), local accuracy of between atlas and template was evaluated, and a toolbox was developed. This study provides a foundation for the region of interest analysis for mouse brain images.

Original languageEnglish (US)
Pages6-8
Number of pages3
DOIs
StatePublished - Dec 1 2005
Externally publishedYes
Event2nd International IEEE EMBS Conference on Neural Engineering, 2005 - Arlington, VA, United States
Duration: Mar 16 2005Mar 19 2005

Other

Other2nd International IEEE EMBS Conference on Neural Engineering, 2005
CountryUnited States
CityArlington, VA
Period3/16/053/19/05

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ASJC Scopus subject areas

  • Engineering(all)

Cite this

Lin, L., Chen, K., Valla, J., He, J., Reiman, E. M., Galons, J. P., Hauss-Wegrzyniak, B., & Alexander, G. E. (2005). MRI template and atlas toolbox for the C57BL/6J mouse brain. 6-8. Paper presented at 2nd International IEEE EMBS Conference on Neural Engineering, 2005, Arlington, VA, United States. https://doi.org/10.1109/CNE.2005.1419537