New approaches for delineating n-dimensional hypervolumes

Benjamin Blonder, Cecina Babich Morrow, Brian Maitner, David J. Harris, Christine Lamanna, Cyrille Violle, Brian Enquist, Andrew J. Kerkhoff

Research output: Contribution to journalArticle

15 Citations (Scopus)

Abstract

Hutchinson's n-dimensional hypervolume concept underlies many applications in contemporary ecology and evolutionary biology. Estimating hypervolumes from sampled data has been an ongoing challenge due to conceptual and computational issues. We present new algorithms for delineating the boundaries and probability density within n-dimensional hypervolumes. The methods produce smooth boundaries that can fit data either more loosely (Gaussian kernel density estimation) or more tightly (one-classification via support vector machine). Further, the algorithms can accept abundance-weighted data, and the resulting hypervolumes can be given a probabilistic interpretation and projected into geographic space. We demonstrate the properties of these methods on a large dataset that characterises the functional traits and geographic distribution of thousands of plants. The methods are available in version ≥2.0.7 of the hypervolume r package. These new algorithms provide: (i) a more robust approach for delineating the shape and density of n-dimensional hypervolumes; (ii) more efficient performance on large and high-dimensional datasets; and (iii) improved measures of functional diversity and environmental niche breadth.

Original languageEnglish (US)
JournalMethods in Ecology and Evolution
DOIs
StateAccepted/In press - 2017

Fingerprint

niche breadth
evolutionary biology
functional diversity
geographical distribution
niches
methodology
ecology
taxonomy
Biological Sciences
seeds
method
support vector machines
distribution
support vector machine

Keywords

  • Functional diversity
  • Functional space
  • Hypervolume
  • Kernel density estimation
  • Niche
  • Niche modelling
  • Support vector machine

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Ecological Modeling

Cite this

Blonder, B., Morrow, C. B., Maitner, B., Harris, D. J., Lamanna, C., Violle, C., ... Kerkhoff, A. J. (Accepted/In press). New approaches for delineating n-dimensional hypervolumes. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.12865

New approaches for delineating n-dimensional hypervolumes. / Blonder, Benjamin; Morrow, Cecina Babich; Maitner, Brian; Harris, David J.; Lamanna, Christine; Violle, Cyrille; Enquist, Brian; Kerkhoff, Andrew J.

In: Methods in Ecology and Evolution, 2017.

Research output: Contribution to journalArticle

Blonder, B, Morrow, CB, Maitner, B, Harris, DJ, Lamanna, C, Violle, C, Enquist, B & Kerkhoff, AJ 2017, 'New approaches for delineating n-dimensional hypervolumes', Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.12865
Blonder, Benjamin ; Morrow, Cecina Babich ; Maitner, Brian ; Harris, David J. ; Lamanna, Christine ; Violle, Cyrille ; Enquist, Brian ; Kerkhoff, Andrew J. / New approaches for delineating n-dimensional hypervolumes. In: Methods in Ecology and Evolution. 2017.
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