Paloverde: An OpenGL 3D phylogeny browser

Research output: Contribution to journalArticlepeer-review

20 Scopus citations

Abstract

Summary: Paloverde is a new program designed to help visualize the phylogenetic structure of moderately large trees - trees on the scale of 100-2500 leaf nodes. The program embeds the user in an interactive virtual 3D world in which a large tree presented in various layouts can be manipulated through a mouse interface. The program implements radial 2D layouts, and true 3D spiral, conical and hemispherical (i.e. truly 'tree'-like) layouts. Subclades can be defined in the input file (using standard node-based definitions) and displayed collapsed as new leaf nodes, or left intact but annotated with names around the periphery of the tree. A search tool lets the user zoom to any selected leaf node. Paloverde is an open source project written in ANSI C using the OpenGL library for 3D visualization.

Original languageEnglish (US)
Pages (from-to)1004-1006
Number of pages3
JournalBioinformatics
Volume22
Issue number8
DOIs
StatePublished - Apr 2006

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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