Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

Rajeev K. Varshney, Chengcheng Shi, Mahendar Thudi, Cedric Mariac, Jason Wallace, Peng Qi, He Zhang, Yusheng Zhao, Xiyin Wang, Abhishek Rathore, Rakesh K. Srivastava, Annapurna Chitikineni, Guangyi Fan, Prasad Bajaj, Somashekhar Punnuri, S. K. Gupta, Hao Wang, Yong Jiang, Marie Couderc, Mohan A.V.S.K. KattaDev R. Paudel, K. D. Mungra, Wenbin Chen, Karen R. Harris-Shultz, Vanika Garg, Neetin Desai, Dadakhalandar Doddamani, Ndjido Ardo Kane, Joann A. Conner, Arindam Ghatak, Palak Chaturvedi, Sabarinath Subramaniam, Om Parkash Yadav, Cécile Berthouly-Salazar, Falalou Hamidou, Jianping Wang, Xinming Liang, Jérémy Clotault, Hari D. Upadhyaya, Philippe Cubry, Bénédicte Rhoné, Mame Codou Gueye, Ramanjulu Sunkar, Christian Dupuy, Francesca Sparvoli, Shifeng Cheng, R. S. Mahala, Bharat Singh, Rattan S. Yadav, Eric H Lyons, Swapan K. Datta, C. Tom Hash, Katrien M. Devos, Edward Buckler, Jeffrey L. Bennetzen, Andrew H. Paterson, Peggy Ozias-Akins, Stefania Grando, Jun Wang, Trilochan Mohapatra, Wolfram Weckwerth, Jochen C. Reif, Xin Liu, Yves Vigouroux, Xun Xu

Research output: Contribution to journalArticle

59 Citations (Scopus)

Abstract

Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million farmers in arid and semi-arid regions of sub-Saharan Africa, India and South Asia. We report the â 1/41.79 Gb draft whole genome sequence of reference genotype Tift 23D 2 B 1-P1-P5, which contains an estimated 38,579 genes. We highlight the substantial enrichment for wax biosynthesis genes, which may contribute to heat and drought tolerance in this crop. We resequenced and analyzed 994 pearl millet lines, enabling insights into population structure, genetic diversity and domestication. We use these resequencing data to establish marker trait associations for genomic selection, to define heterotic pools, and to predict hybrid performance. We believe that these resources should empower researchers and breeders to improve this important staple crop.

Original languageEnglish (US)
Pages (from-to)969-976
Number of pages8
JournalNature Biotechnology
Volume35
Issue number10
DOIs
StatePublished - Oct 1 2017

Fingerprint

Pennisetum
Cenchrus
Genes
Genome
Crops
Africa South of the Sahara
Waxes
Droughts
Population Genetics
Arid regions
India
Drought
Biosynthesis
Genotype
Research Personnel
Food
Thermotolerance
Farmers
Domestication

ASJC Scopus subject areas

  • Biotechnology
  • Bioengineering
  • Applied Microbiology and Biotechnology
  • Molecular Medicine
  • Biomedical Engineering

Cite this

Varshney, R. K., Shi, C., Thudi, M., Mariac, C., Wallace, J., Qi, P., ... Xu, X. (2017). Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology, 35(10), 969-976. https://doi.org/10.1038/nbt.3943

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. / Varshney, Rajeev K.; Shi, Chengcheng; Thudi, Mahendar; Mariac, Cedric; Wallace, Jason; Qi, Peng; Zhang, He; Zhao, Yusheng; Wang, Xiyin; Rathore, Abhishek; Srivastava, Rakesh K.; Chitikineni, Annapurna; Fan, Guangyi; Bajaj, Prasad; Punnuri, Somashekhar; Gupta, S. K.; Wang, Hao; Jiang, Yong; Couderc, Marie; Katta, Mohan A.V.S.K.; Paudel, Dev R.; Mungra, K. D.; Chen, Wenbin; Harris-Shultz, Karen R.; Garg, Vanika; Desai, Neetin; Doddamani, Dadakhalandar; Kane, Ndjido Ardo; Conner, Joann A.; Ghatak, Arindam; Chaturvedi, Palak; Subramaniam, Sabarinath; Yadav, Om Parkash; Berthouly-Salazar, Cécile; Hamidou, Falalou; Wang, Jianping; Liang, Xinming; Clotault, Jérémy; Upadhyaya, Hari D.; Cubry, Philippe; Rhoné, Bénédicte; Gueye, Mame Codou; Sunkar, Ramanjulu; Dupuy, Christian; Sparvoli, Francesca; Cheng, Shifeng; Mahala, R. S.; Singh, Bharat; Yadav, Rattan S.; Lyons, Eric H; Datta, Swapan K.; Tom Hash, C.; Devos, Katrien M.; Buckler, Edward; Bennetzen, Jeffrey L.; Paterson, Andrew H.; Ozias-Akins, Peggy; Grando, Stefania; Wang, Jun; Mohapatra, Trilochan; Weckwerth, Wolfram; Reif, Jochen C.; Liu, Xin; Vigouroux, Yves; Xu, Xun.

In: Nature Biotechnology, Vol. 35, No. 10, 01.10.2017, p. 969-976.

Research output: Contribution to journalArticle

Varshney, RK, Shi, C, Thudi, M, Mariac, C, Wallace, J, Qi, P, Zhang, H, Zhao, Y, Wang, X, Rathore, A, Srivastava, RK, Chitikineni, A, Fan, G, Bajaj, P, Punnuri, S, Gupta, SK, Wang, H, Jiang, Y, Couderc, M, Katta, MAVSK, Paudel, DR, Mungra, KD, Chen, W, Harris-Shultz, KR, Garg, V, Desai, N, Doddamani, D, Kane, NA, Conner, JA, Ghatak, A, Chaturvedi, P, Subramaniam, S, Yadav, OP, Berthouly-Salazar, C, Hamidou, F, Wang, J, Liang, X, Clotault, J, Upadhyaya, HD, Cubry, P, Rhoné, B, Gueye, MC, Sunkar, R, Dupuy, C, Sparvoli, F, Cheng, S, Mahala, RS, Singh, B, Yadav, RS, Lyons, EH, Datta, SK, Tom Hash, C, Devos, KM, Buckler, E, Bennetzen, JL, Paterson, AH, Ozias-Akins, P, Grando, S, Wang, J, Mohapatra, T, Weckwerth, W, Reif, JC, Liu, X, Vigouroux, Y & Xu, X 2017, 'Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments', Nature Biotechnology, vol. 35, no. 10, pp. 969-976. https://doi.org/10.1038/nbt.3943
Varshney, Rajeev K. ; Shi, Chengcheng ; Thudi, Mahendar ; Mariac, Cedric ; Wallace, Jason ; Qi, Peng ; Zhang, He ; Zhao, Yusheng ; Wang, Xiyin ; Rathore, Abhishek ; Srivastava, Rakesh K. ; Chitikineni, Annapurna ; Fan, Guangyi ; Bajaj, Prasad ; Punnuri, Somashekhar ; Gupta, S. K. ; Wang, Hao ; Jiang, Yong ; Couderc, Marie ; Katta, Mohan A.V.S.K. ; Paudel, Dev R. ; Mungra, K. D. ; Chen, Wenbin ; Harris-Shultz, Karen R. ; Garg, Vanika ; Desai, Neetin ; Doddamani, Dadakhalandar ; Kane, Ndjido Ardo ; Conner, Joann A. ; Ghatak, Arindam ; Chaturvedi, Palak ; Subramaniam, Sabarinath ; Yadav, Om Parkash ; Berthouly-Salazar, Cécile ; Hamidou, Falalou ; Wang, Jianping ; Liang, Xinming ; Clotault, Jérémy ; Upadhyaya, Hari D. ; Cubry, Philippe ; Rhoné, Bénédicte ; Gueye, Mame Codou ; Sunkar, Ramanjulu ; Dupuy, Christian ; Sparvoli, Francesca ; Cheng, Shifeng ; Mahala, R. S. ; Singh, Bharat ; Yadav, Rattan S. ; Lyons, Eric H ; Datta, Swapan K. ; Tom Hash, C. ; Devos, Katrien M. ; Buckler, Edward ; Bennetzen, Jeffrey L. ; Paterson, Andrew H. ; Ozias-Akins, Peggy ; Grando, Stefania ; Wang, Jun ; Mohapatra, Trilochan ; Weckwerth, Wolfram ; Reif, Jochen C. ; Liu, Xin ; Vigouroux, Yves ; Xu, Xun. / Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. In: Nature Biotechnology. 2017 ; Vol. 35, No. 10. pp. 969-976.
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AU - Thudi, Mahendar

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AU - Wallace, Jason

AU - Qi, Peng

AU - Zhang, He

AU - Zhao, Yusheng

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AU - Rathore, Abhishek

AU - Srivastava, Rakesh K.

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AU - Chaturvedi, Palak

AU - Subramaniam, Sabarinath

AU - Yadav, Om Parkash

AU - Berthouly-Salazar, Cécile

AU - Hamidou, Falalou

AU - Wang, Jianping

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AU - Dupuy, Christian

AU - Sparvoli, Francesca

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AU - Mahala, R. S.

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AU - Grando, Stefania

AU - Wang, Jun

AU - Mohapatra, Trilochan

AU - Weckwerth, Wolfram

AU - Reif, Jochen C.

AU - Liu, Xin

AU - Vigouroux, Yves

AU - Xu, Xun

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