Pulsed-field gel electrophoresis for long-range restriction mapping.

Robert M. Gemmill, Richard Bolin, Hans Albertsen, Jeff P. Tomkins, Rod A Wing

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

This unit describes procedures for generating long-range restriction maps of genomic DNA and for analysis of large insert clones. The basic protocol details restriction digestion of agarose-embedded DNA, PFGE separation, Southern transfer, and hybridization. Support protocols describe the preparation of high-molecular-weight genomic DNA samples in agarose blocks and in agarose microbeads, respectively. Additional support protocols describe the preparation of DNA size standards from l phage and two yeast species, Saccharomyces cerevisiae and Schizosaccharomyces pombe. An alternative method of preparing S. cerevisiae size standards using lithium dodecyl sulfate (LiDS) solubilization is provided. The final protocol details the preparation of BAC DNA suitable for digestion, mapping, and sequencing.

Original languageEnglish (US)
JournalCurrent protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.]
VolumeChapter 5
StatePublished - Feb 2002
Externally publishedYes

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Restriction Mapping
Pulsed Field Gel Electrophoresis
Sepharose
DNA
Saccharomyces cerevisiae
Digestion
Schizosaccharomyces
Microspheres
Bacteriophages
Clone Cells
Yeasts
Molecular Weight

ASJC Scopus subject areas

  • Medicine(all)

Cite this

Pulsed-field gel electrophoresis for long-range restriction mapping. / Gemmill, Robert M.; Bolin, Richard; Albertsen, Hans; Tomkins, Jeff P.; Wing, Rod A.

In: Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.], Vol. Chapter 5, 02.2002.

Research output: Contribution to journalArticle

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