Quasi-cyclic codes exhibiting the gene regulatory network of the cell cycle

Vida Ravanmehr, Bane V Vasic

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

We present an artificial Boolean network exhibiting the behaviour similar to that of the cell cycle: three phases and checkpoints between them. The phases follow the increase of the cell mass, while checkpoints ensure that internal errors are corrected before moving to the next phase. The network can tolerate up to one gene mutation and one transient error in gene expressions. It has only 6 genes and is the smallest and simplest network with such behavior. It is based on a special type of error correction codes, resulting in an elegant and symmetric network topology and highly symmetric attractor basin.

Original languageEnglish (US)
Title of host publication2012 IEEE Symposium on Computational Intelligence and Computational Biology, CIBCB 2012
Pages412-417
Number of pages6
DOIs
StatePublished - 2012
Event2012 IEEE Symposium on Computational Intelligence and Computational Biology, CIBCB 2012 - San Diego, CA, United States
Duration: May 9 2012May 12 2012

Other

Other2012 IEEE Symposium on Computational Intelligence and Computational Biology, CIBCB 2012
CountryUnited States
CitySan Diego, CA
Period5/9/125/12/12

Fingerprint

Genes
Cells
Error correction
Gene expression
Topology

Keywords

  • Boolean networks
  • cell cycle
  • error correction
  • gene regulatory networks
  • quasi-cyclic codes

ASJC Scopus subject areas

  • Electrical and Electronic Engineering

Cite this

Ravanmehr, V., & Vasic, B. V. (2012). Quasi-cyclic codes exhibiting the gene regulatory network of the cell cycle. In 2012 IEEE Symposium on Computational Intelligence and Computational Biology, CIBCB 2012 (pp. 412-417). [6217259] https://doi.org/10.1109/CIBCB.2012.6217259

Quasi-cyclic codes exhibiting the gene regulatory network of the cell cycle. / Ravanmehr, Vida; Vasic, Bane V.

2012 IEEE Symposium on Computational Intelligence and Computational Biology, CIBCB 2012. 2012. p. 412-417 6217259.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ravanmehr, V & Vasic, BV 2012, Quasi-cyclic codes exhibiting the gene regulatory network of the cell cycle. in 2012 IEEE Symposium on Computational Intelligence and Computational Biology, CIBCB 2012., 6217259, pp. 412-417, 2012 IEEE Symposium on Computational Intelligence and Computational Biology, CIBCB 2012, San Diego, CA, United States, 5/9/12. https://doi.org/10.1109/CIBCB.2012.6217259
Ravanmehr V, Vasic BV. Quasi-cyclic codes exhibiting the gene regulatory network of the cell cycle. In 2012 IEEE Symposium on Computational Intelligence and Computational Biology, CIBCB 2012. 2012. p. 412-417. 6217259 https://doi.org/10.1109/CIBCB.2012.6217259
Ravanmehr, Vida ; Vasic, Bane V. / Quasi-cyclic codes exhibiting the gene regulatory network of the cell cycle. 2012 IEEE Symposium on Computational Intelligence and Computational Biology, CIBCB 2012. 2012. pp. 412-417
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