RMD: a rice mutant database for functional analysis of the rice genome.

Jianwei - Zhang, Caishun Li, Changyin Wu, Lizhong Xiong, Guoxing Chen, Qifa Zhang, Shiping Wang

Research output: Contribution to journalArticle

148 Citations (Scopus)

Abstract

Rice Mutant Database (RMD, http://rmd.ncpgr.cn) is an archive for collecting, managing and searching information of the T-DNA insertion mutants generated by an enhancer trap system. We have generated approximately 129 000 rice mutant (enhancer trap) lines that are now being gathered in the database. Information collected in RMD includes mutant phenotypes, reporter-gene expression patterns, flanking sequences of T-DNA insertional sites, seed availability and others, and can be searched by respective ID, keyword, nucleotide sequence or protein sequence on the website. This database is both a mutant collection for identifying novel genes and regulatory elements and a pattern line collection for ectopic expression of target gene in specific tissue or at specific growth stage.

Original languageEnglish (US)
JournalNucleic Acids Research
Volume34
Issue numberDatabase issue
StatePublished - Jan 1 2006
Externally publishedYes

Fingerprint

Genome
Databases
Regulator Genes
Reporter Genes
Seeds
Phenotype
Gene Expression
Growth
Oryza
Proteins
T-DNA
Ectopic Gene Expression

ASJC Scopus subject areas

  • Genetics

Cite this

Zhang, J. ., Li, C., Wu, C., Xiong, L., Chen, G., Zhang, Q., & Wang, S. (2006). RMD: a rice mutant database for functional analysis of the rice genome. Nucleic Acids Research, 34(Database issue).

RMD : a rice mutant database for functional analysis of the rice genome. / Zhang, Jianwei -; Li, Caishun; Wu, Changyin; Xiong, Lizhong; Chen, Guoxing; Zhang, Qifa; Wang, Shiping.

In: Nucleic Acids Research, Vol. 34, No. Database issue, 01.01.2006.

Research output: Contribution to journalArticle

Zhang, J, Li, C, Wu, C, Xiong, L, Chen, G, Zhang, Q & Wang, S 2006, 'RMD: a rice mutant database for functional analysis of the rice genome.', Nucleic Acids Research, vol. 34, no. Database issue.
Zhang J, Li C, Wu C, Xiong L, Chen G, Zhang Q et al. RMD: a rice mutant database for functional analysis of the rice genome. Nucleic Acids Research. 2006 Jan 1;34(Database issue).
Zhang, Jianwei - ; Li, Caishun ; Wu, Changyin ; Xiong, Lizhong ; Chen, Guoxing ; Zhang, Qifa ; Wang, Shiping. / RMD : a rice mutant database for functional analysis of the rice genome. In: Nucleic Acids Research. 2006 ; Vol. 34, No. Database issue.
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