SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses

Michael S. Barker, Katrina M. Dlugosch, Chaitanya C.A. Reddy, Sarah N. Amyotte, Loren H. Rieseberg

Research output: Contribution to journalArticle

12 Scopus citations

Abstract

Scaffolded and Corrected Assembly of Roche 454 (SCARF) is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high-quality reference sequences from related species. The program was created to knit together 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences.

Original languageEnglish (US)
Pages (from-to)535-536
Number of pages2
JournalBioinformatics
Volume25
Issue number4
DOIs
StatePublished - Feb 1 2009
Externally publishedYes

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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