SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses

Michael S Barker, Katrina M Dlugosch, Chaitanya C A Reddy, Sarah N. Amyotte, Loren H. Rieseberg

Research output: Contribution to journalArticle

12 Citations (Scopus)

Abstract

Scaffolded and Corrected Assembly of Roche 454 (SCARF) is a next-generation sequence assembly tool for evolutionary genomics that is designed especially for assembling 454 EST sequences against high-quality reference sequences from related species. The program was created to knit together 454 contigs that do not assemble during traditional de novo assembly, using a reference sequence library to orient the 454 sequences.

Original languageEnglish (US)
Pages (from-to)535-536
Number of pages2
JournalBioinformatics
Volume25
Issue number4
DOIs
StatePublished - Feb 2009
Externally publishedYes

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Metagenomics
Genomics
Libraries

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology
  • Computational Theory and Mathematics
  • Computer Science Applications
  • Computational Mathematics
  • Statistics and Probability

Cite this

SCARF : Maximizing next-generation EST assemblies for evolutionary and population genomic analyses. / Barker, Michael S; Dlugosch, Katrina M; Reddy, Chaitanya C A; Amyotte, Sarah N.; Rieseberg, Loren H.

In: Bioinformatics, Vol. 25, No. 4, 02.2009, p. 535-536.

Research output: Contribution to journalArticle

Barker, Michael S ; Dlugosch, Katrina M ; Reddy, Chaitanya C A ; Amyotte, Sarah N. ; Rieseberg, Loren H. / SCARF : Maximizing next-generation EST assemblies for evolutionary and population genomic analyses. In: Bioinformatics. 2009 ; Vol. 25, No. 4. pp. 535-536.
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