Standard and specific compression techniques for DNA microarray images

Miguel Hernández-Cabronero, Ian Blanes, Michael W Marcellin, Joan Serra-Sagristá

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

We review the state of the art in DNA microarray image compression and provide original comparisons between standard and microarray-specific compression techniques that validate and expand previous work. First, we describe the most relevant approaches published in the literature and classify them according to the stage of the typical image compression process where each approach makes its contribution, and then we summarize the compression results reported for these microarray-specific image compression schemes. In a set of experiments conducted for this paper, we obtain new results for several popular image coding techniques that include the most recent coding standards. Prediction-based schemes CALIC and JPEG-LS are the best-performing standard compressors, but are improved upon by the best microarray-specific technique, Battiato's CNN-based scheme.

Original languageEnglish (US)
Pages (from-to)30-49
Number of pages20
JournalAlgorithms
Volume5
Issue number1
DOIs
StatePublished - Mar 2012

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DNA Microarray
Image Compression
Microarrays
Microarray
DNA
Compression
Image compression
Image Coding
Compressor
Expand
Coding
Image coding
Classify
Compressors
Prediction
Experiment
Standards
Experiments

Keywords

  • Image coding standards
  • JPEG2000
  • Microarray image compression
  • Microarray images

ASJC Scopus subject areas

  • Computational Theory and Mathematics
  • Computational Mathematics
  • Numerical Analysis
  • Theoretical Computer Science

Cite this

Standard and specific compression techniques for DNA microarray images. / Hernández-Cabronero, Miguel; Blanes, Ian; Marcellin, Michael W; Serra-Sagristá, Joan.

In: Algorithms, Vol. 5, No. 1, 03.2012, p. 30-49.

Research output: Contribution to journalArticle

Hernández-Cabronero, M, Blanes, I, Marcellin, MW & Serra-Sagristá, J 2012, 'Standard and specific compression techniques for DNA microarray images', Algorithms, vol. 5, no. 1, pp. 30-49. https://doi.org/10.3390/a5010030
Hernández-Cabronero, Miguel ; Blanes, Ian ; Marcellin, Michael W ; Serra-Sagristá, Joan. / Standard and specific compression techniques for DNA microarray images. In: Algorithms. 2012 ; Vol. 5, No. 1. pp. 30-49.
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