Structure of the intramolecular human telomeric G-quadruplex in potassium solution

A novel adenine triple formation

Jixun Dai, Chandanamali Punchihewa, Attila Ambrus, Ding Chen, Roger A. Jones, Danzhou Yang

Research output: Contribution to journalArticle

237 Citations (Scopus)

Abstract

We report the NMR solution structure of the intramolecular G-quadruplex formed in human telomeric DNA in K+. The hybrid-type telomeric G-quadruplex consists of three G-tetrads linked with mixed parallel-antiparallel G-strands, with the bottom two G-tetrads having the same G-arrangement (anti:anti:syn:anti) and the top G-tetrad having the reversed G-arrangement (syn:syn:anti:syn). The three TTA loop segments adopt different conformations, with the first TTA assuming a double-chain-reversal loop conformation, and the second and third TTA assuming lateral loop conformations. The NMR structure is very well defined, including the three TTA loops and the two flanking sequences at 5′- and 3′-ends. Our study indicates that the three loop regions interact with the core G-tetrads in a specific way that defines and stabilizes the unique human telomeric G-quadruplex structure in K+. Significantly, a novel adenine triple platform is formed with three naturally occurring adenine residues, A21, A3 and A9, capping the top tetrad of the hybrid-type telomeric G-quadruplex. This adenine triple is likely to play an important role in the formation of a stable human telomeric G-quadruplex structure in K+. The unique human telomeric G-quadruplex structure formed in K+ suggests that it can be specifically targeted for anticancer drug design.

Original languageEnglish (US)
Pages (from-to)2440-2450
Number of pages11
JournalNucleic Acids Research
Volume35
Issue number7
DOIs
StatePublished - Apr 2007

Fingerprint

G-Quadruplexes
Adenine
Potassium
3' Flanking Region
5' Flanking Region
Drug Design
DNA

ASJC Scopus subject areas

  • Genetics

Cite this

Structure of the intramolecular human telomeric G-quadruplex in potassium solution : A novel adenine triple formation. / Dai, Jixun; Punchihewa, Chandanamali; Ambrus, Attila; Chen, Ding; Jones, Roger A.; Yang, Danzhou.

In: Nucleic Acids Research, Vol. 35, No. 7, 04.2007, p. 2440-2450.

Research output: Contribution to journalArticle

Dai, Jixun ; Punchihewa, Chandanamali ; Ambrus, Attila ; Chen, Ding ; Jones, Roger A. ; Yang, Danzhou. / Structure of the intramolecular human telomeric G-quadruplex in potassium solution : A novel adenine triple formation. In: Nucleic Acids Research. 2007 ; Vol. 35, No. 7. pp. 2440-2450.
@article{bf6b3cdde2fe4ad8a94b99352fc00305,
title = "Structure of the intramolecular human telomeric G-quadruplex in potassium solution: A novel adenine triple formation",
abstract = "We report the NMR solution structure of the intramolecular G-quadruplex formed in human telomeric DNA in K+. The hybrid-type telomeric G-quadruplex consists of three G-tetrads linked with mixed parallel-antiparallel G-strands, with the bottom two G-tetrads having the same G-arrangement (anti:anti:syn:anti) and the top G-tetrad having the reversed G-arrangement (syn:syn:anti:syn). The three TTA loop segments adopt different conformations, with the first TTA assuming a double-chain-reversal loop conformation, and the second and third TTA assuming lateral loop conformations. The NMR structure is very well defined, including the three TTA loops and the two flanking sequences at 5′- and 3′-ends. Our study indicates that the three loop regions interact with the core G-tetrads in a specific way that defines and stabilizes the unique human telomeric G-quadruplex structure in K+. Significantly, a novel adenine triple platform is formed with three naturally occurring adenine residues, A21, A3 and A9, capping the top tetrad of the hybrid-type telomeric G-quadruplex. This adenine triple is likely to play an important role in the formation of a stable human telomeric G-quadruplex structure in K+. The unique human telomeric G-quadruplex structure formed in K+ suggests that it can be specifically targeted for anticancer drug design.",
author = "Jixun Dai and Chandanamali Punchihewa and Attila Ambrus and Ding Chen and Jones, {Roger A.} and Danzhou Yang",
year = "2007",
month = "4",
doi = "10.1093/nar/gkm009",
language = "English (US)",
volume = "35",
pages = "2440--2450",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "7",

}

TY - JOUR

T1 - Structure of the intramolecular human telomeric G-quadruplex in potassium solution

T2 - A novel adenine triple formation

AU - Dai, Jixun

AU - Punchihewa, Chandanamali

AU - Ambrus, Attila

AU - Chen, Ding

AU - Jones, Roger A.

AU - Yang, Danzhou

PY - 2007/4

Y1 - 2007/4

N2 - We report the NMR solution structure of the intramolecular G-quadruplex formed in human telomeric DNA in K+. The hybrid-type telomeric G-quadruplex consists of three G-tetrads linked with mixed parallel-antiparallel G-strands, with the bottom two G-tetrads having the same G-arrangement (anti:anti:syn:anti) and the top G-tetrad having the reversed G-arrangement (syn:syn:anti:syn). The three TTA loop segments adopt different conformations, with the first TTA assuming a double-chain-reversal loop conformation, and the second and third TTA assuming lateral loop conformations. The NMR structure is very well defined, including the three TTA loops and the two flanking sequences at 5′- and 3′-ends. Our study indicates that the three loop regions interact with the core G-tetrads in a specific way that defines and stabilizes the unique human telomeric G-quadruplex structure in K+. Significantly, a novel adenine triple platform is formed with three naturally occurring adenine residues, A21, A3 and A9, capping the top tetrad of the hybrid-type telomeric G-quadruplex. This adenine triple is likely to play an important role in the formation of a stable human telomeric G-quadruplex structure in K+. The unique human telomeric G-quadruplex structure formed in K+ suggests that it can be specifically targeted for anticancer drug design.

AB - We report the NMR solution structure of the intramolecular G-quadruplex formed in human telomeric DNA in K+. The hybrid-type telomeric G-quadruplex consists of three G-tetrads linked with mixed parallel-antiparallel G-strands, with the bottom two G-tetrads having the same G-arrangement (anti:anti:syn:anti) and the top G-tetrad having the reversed G-arrangement (syn:syn:anti:syn). The three TTA loop segments adopt different conformations, with the first TTA assuming a double-chain-reversal loop conformation, and the second and third TTA assuming lateral loop conformations. The NMR structure is very well defined, including the three TTA loops and the two flanking sequences at 5′- and 3′-ends. Our study indicates that the three loop regions interact with the core G-tetrads in a specific way that defines and stabilizes the unique human telomeric G-quadruplex structure in K+. Significantly, a novel adenine triple platform is formed with three naturally occurring adenine residues, A21, A3 and A9, capping the top tetrad of the hybrid-type telomeric G-quadruplex. This adenine triple is likely to play an important role in the formation of a stable human telomeric G-quadruplex structure in K+. The unique human telomeric G-quadruplex structure formed in K+ suggests that it can be specifically targeted for anticancer drug design.

UR - http://www.scopus.com/inward/record.url?scp=34249846802&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=34249846802&partnerID=8YFLogxK

U2 - 10.1093/nar/gkm009

DO - 10.1093/nar/gkm009

M3 - Article

VL - 35

SP - 2440

EP - 2450

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - 7

ER -