Supertrees by flipping

D. Chen; O. Eulenstein; David Fernández-Baca; M. Sanderson

doi:10.1007/3-540-45655-4_42

Supertrees by flipping

D. Chen, O. Eulenstein, David Fernández-Baca, M. Sanderson

Ecology and Evolutionary Biology

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

6 Scopus citations

Abstract

The input to a supertree problem is a collection of phylogenetic trees that intersect pairwise in their leaf sets; the goal is to construct a single tree that retains as much as possible of the information in the input. This task is complicated by inconsistencies due to errors. We consider the case where the source trees are rooted and are represented by the clusters they exhibit. The problem is to find the minimum number of flips needed to resolve all inconsistencies, where each flip moves a taxon into or out of a cluster. We prove that the minimum flip problem is NP-complete, but show that it is fixed-parameter tractable and give an approximation algorithm for a special case.

Original language	English (US)
Title of host publication	Computing and Combinatorics - 8th Annual International Conference, COCOON 2002, Proceedings
Editors	Oscar H. Ibarra, Louxin Zhang
Publisher	Springer-Verlag
Pages	391-400
Number of pages	10
ISBN (Print)	354043996X, 9783540439967
DOIs	https://doi.org/10.1007/3-540-45655-4_42
State	Published - Jan 1 2002
Event	8th Annual International Conference on Computing and Combinatorics, COCOON 2002 - Singapore, Singapore Duration: Aug 15 2002 → Aug 17 2002

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	2387
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Other

Other	8th Annual International Conference on Computing and Combinatorics, COCOON 2002
Country	Singapore
City	Singapore
Period	8/15/02 → 8/17/02

ASJC Scopus subject areas

Theoretical Computer Science
Computer Science(all)

Access to Document

10.1007/3-540-45655-4_42

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Cite this

Chen, D., Eulenstein, O., Fernández-Baca, D., & Sanderson, M. (2002). Supertrees by flipping. In O. H. Ibarra, & L. Zhang (Eds.), Computing and Combinatorics - 8th Annual International Conference, COCOON 2002, Proceedings (pp. 391-400). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 2387). Springer-Verlag. https://doi.org/10.1007/3-540-45655-4_42

Supertrees by flipping. / Chen, D.; Eulenstein, O.; Fernández-Baca, David; Sanderson, M.

Computing and Combinatorics - 8th Annual International Conference, COCOON 2002, Proceedings. ed. / Oscar H. Ibarra; Louxin Zhang. Springer-Verlag, 2002. p. 391-400 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 2387).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Chen, D, Eulenstein, O, Fernández-Baca, D & Sanderson, M 2002, Supertrees by flipping. in OH Ibarra & L Zhang (eds), Computing and Combinatorics - 8th Annual International Conference, COCOON 2002, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 2387, Springer-Verlag, pp. 391-400, 8th Annual International Conference on Computing and Combinatorics, COCOON 2002, Singapore, Singapore, 8/15/02. https://doi.org/10.1007/3-540-45655-4_42

Chen D, Eulenstein O, Fernández-Baca D, Sanderson M. Supertrees by flipping. In Ibarra OH, Zhang L, editors, Computing and Combinatorics - 8th Annual International Conference, COCOON 2002, Proceedings. Springer-Verlag. 2002. p. 391-400. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). https://doi.org/10.1007/3-540-45655-4_42

Chen, D. ; Eulenstein, O. ; Fernández-Baca, David ; Sanderson, M. / Supertrees by flipping. Computing and Combinatorics - 8th Annual International Conference, COCOON 2002, Proceedings. editor / Oscar H. Ibarra ; Louxin Zhang. Springer-Verlag, 2002. pp. 391-400 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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