Surface traction and the dynamics of elastic rods at low Reynolds number

Eva M. Strawbridge, Charles William Wolgemuth

Research output: Contribution to journalArticle

Abstract

Molecular and cell biological processes often use proteins and structures that are significantly longer in one dimension than they are in the other two, for example, DNA, actin, and bacterial flagella. The dynamics of these structures are the consequence of the balance between the elastic forces from the structure itself and viscous forces from the surrounding fluid. Typically, the motion of these filamentary objects is described using variations of the Kirchhoff rod equations with resistive forces from the fluid treated as body forces acting on the centerline. In reality, though, these forces are applied to the surface of the filament; however, the standard derivation of the Kirchhoff equations ignores surface traction stresses. Here, we rederive the Kirchhoff rod equations in the presence of resistive traction stresses and determine the conditions under which treating the drag forces as body forces is reasonable. We show that in most biologically relevant cases the standard implementation of resistive forces into the Kirchhoff rod equations is applicable; however, we note one particular biological system where the Kirchhoff rod formalism may not apply.

Original languageEnglish (US)
Article number031904
JournalPhysical Review E - Statistical, Nonlinear, and Soft Matter Physics
Volume86
Issue number3
DOIs
StatePublished - Sep 5 2012
Externally publishedYes

Fingerprint

Elastic Rods
traction
Low Reynolds number
low Reynolds number
rods
Kirchhoff Equation
Fluid
Drag Force
Actin
Filament
fluids
Biological Systems
One Dimension
drag
filaments
derivation
deoxyribonucleic acid
Protein
formalism
proteins

ASJC Scopus subject areas

  • Condensed Matter Physics
  • Statistical and Nonlinear Physics
  • Statistics and Probability

Cite this

Surface traction and the dynamics of elastic rods at low Reynolds number. / Strawbridge, Eva M.; Wolgemuth, Charles William.

In: Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, Vol. 86, No. 3, 031904, 05.09.2012.

Research output: Contribution to journalArticle

@article{536fe1df726343b7860479c0baee2be6,
title = "Surface traction and the dynamics of elastic rods at low Reynolds number",
abstract = "Molecular and cell biological processes often use proteins and structures that are significantly longer in one dimension than they are in the other two, for example, DNA, actin, and bacterial flagella. The dynamics of these structures are the consequence of the balance between the elastic forces from the structure itself and viscous forces from the surrounding fluid. Typically, the motion of these filamentary objects is described using variations of the Kirchhoff rod equations with resistive forces from the fluid treated as body forces acting on the centerline. In reality, though, these forces are applied to the surface of the filament; however, the standard derivation of the Kirchhoff equations ignores surface traction stresses. Here, we rederive the Kirchhoff rod equations in the presence of resistive traction stresses and determine the conditions under which treating the drag forces as body forces is reasonable. We show that in most biologically relevant cases the standard implementation of resistive forces into the Kirchhoff rod equations is applicable; however, we note one particular biological system where the Kirchhoff rod formalism may not apply.",
author = "Strawbridge, {Eva M.} and Wolgemuth, {Charles William}",
year = "2012",
month = "9",
day = "5",
doi = "10.1103/PhysRevE.86.031904",
language = "English (US)",
volume = "86",
journal = "Physical review. E",
issn = "2470-0045",
publisher = "American Physical Society",
number = "3",

}

TY - JOUR

T1 - Surface traction and the dynamics of elastic rods at low Reynolds number

AU - Strawbridge, Eva M.

AU - Wolgemuth, Charles William

PY - 2012/9/5

Y1 - 2012/9/5

N2 - Molecular and cell biological processes often use proteins and structures that are significantly longer in one dimension than they are in the other two, for example, DNA, actin, and bacterial flagella. The dynamics of these structures are the consequence of the balance between the elastic forces from the structure itself and viscous forces from the surrounding fluid. Typically, the motion of these filamentary objects is described using variations of the Kirchhoff rod equations with resistive forces from the fluid treated as body forces acting on the centerline. In reality, though, these forces are applied to the surface of the filament; however, the standard derivation of the Kirchhoff equations ignores surface traction stresses. Here, we rederive the Kirchhoff rod equations in the presence of resistive traction stresses and determine the conditions under which treating the drag forces as body forces is reasonable. We show that in most biologically relevant cases the standard implementation of resistive forces into the Kirchhoff rod equations is applicable; however, we note one particular biological system where the Kirchhoff rod formalism may not apply.

AB - Molecular and cell biological processes often use proteins and structures that are significantly longer in one dimension than they are in the other two, for example, DNA, actin, and bacterial flagella. The dynamics of these structures are the consequence of the balance between the elastic forces from the structure itself and viscous forces from the surrounding fluid. Typically, the motion of these filamentary objects is described using variations of the Kirchhoff rod equations with resistive forces from the fluid treated as body forces acting on the centerline. In reality, though, these forces are applied to the surface of the filament; however, the standard derivation of the Kirchhoff equations ignores surface traction stresses. Here, we rederive the Kirchhoff rod equations in the presence of resistive traction stresses and determine the conditions under which treating the drag forces as body forces is reasonable. We show that in most biologically relevant cases the standard implementation of resistive forces into the Kirchhoff rod equations is applicable; however, we note one particular biological system where the Kirchhoff rod formalism may not apply.

UR - http://www.scopus.com/inward/record.url?scp=84866382235&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84866382235&partnerID=8YFLogxK

U2 - 10.1103/PhysRevE.86.031904

DO - 10.1103/PhysRevE.86.031904

M3 - Article

AN - SCOPUS:84866382235

VL - 86

JO - Physical review. E

JF - Physical review. E

SN - 2470-0045

IS - 3

M1 - 031904

ER -