T-BAs version 2.1: Tree-based alignment selector toolkit for evolutionary placement of DNA sequences and viewing alignments and specimen metadata on curated and custom trees

Ignazio Carbone, James B. White, Jolanta Miadlikowska, A. Elizabeth Arnold, Mark A. Miller, Nicolas Magain, Jana M. U'Ren, François Lutzoni

Research output: Contribution to journalArticle

4 Scopus citations

Abstract

The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.

Original languageEnglish (US)
Article numbere00328-19
JournalMicrobiology Resource Announcements
Volume8
Issue number29
DOIs
StatePublished - Jul 18 2019

ASJC Scopus subject areas

  • Molecular Biology
  • Immunology and Microbiology (miscellaneous)
  • Genetics

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