Abstract
Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 819-820 |
| Number of pages | 2 |
| Journal | Mitochondrial DNA Part B: Resources |
| Volume | 2 |
| Issue number | 2 |
| DOIs | |
| State | Published - Dec 20 2017 |
| Externally published | Yes |
Keywords
- aus-type
- chloroplast genome
- N22
- Nagina-22
- Oryza sativa
- Poaceae
ASJC Scopus subject areas
- Genetics
- Molecular Biology
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Cite this
Yu, Y., Lee, H. O., Chin, J. H., Park, H. Y., & Yoo, S. C. (2017). The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae). Mitochondrial DNA Part B: Resources, 2(2), 819-820. https://doi.org/10.1080/23802359.2017.1407710