The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)

Yeisoo Yu, Hyun Oh Lee, Joong Hyoun Chin, Han Yong Park, Soo Cheul Yoo

Research output: Contribution to journalArticle

Abstract

Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.

Original languageEnglish (US)
Pages (from-to)819-820
Number of pages2
JournalMitochondrial DNA Part B: Resources
Volume2
Issue number2
DOIs
StatePublished - Dec 20 2017
Externally publishedYes

Fingerprint

Chloroplast Genome
Poaceae
Genome
Genes
Circular DNA
Transfer RNA
rRNA Genes
Open Reading Frames
Food
Oryza
Proteins

Keywords

  • aus-type
  • chloroplast genome
  • N22
  • Nagina-22
  • Oryza sativa
  • Poaceae

ASJC Scopus subject areas

  • Genetics
  • Molecular Biology

Cite this

The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae). / Yu, Yeisoo; Lee, Hyun Oh; Chin, Joong Hyoun; Park, Han Yong; Yoo, Soo Cheul.

In: Mitochondrial DNA Part B: Resources, Vol. 2, No. 2, 20.12.2017, p. 819-820.

Research output: Contribution to journalArticle

Yu, Yeisoo ; Lee, Hyun Oh ; Chin, Joong Hyoun ; Park, Han Yong ; Yoo, Soo Cheul. / The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae). In: Mitochondrial DNA Part B: Resources. 2017 ; Vol. 2, No. 2. pp. 819-820.
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