Abstract
Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 819-820 |
| Number of pages | 2 |
| Journal | Mitochondrial DNA Part B: Resources |
| Volume | 2 |
| Issue number | 2 |
| DOIs | |
| State | Published - Dec 20 2017 |
| Externally published | Yes |
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Keywords
- aus-type
- chloroplast genome
- N22
- Nagina-22
- Oryza sativa
- Poaceae
ASJC Scopus subject areas
- Genetics
- Molecular Biology
Cite this
The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae). / Yu, Yeisoo; Lee, Hyun Oh; Chin, Joong Hyoun; Park, Han Yong; Yoo, Soo Cheul.
In: Mitochondrial DNA Part B: Resources, Vol. 2, No. 2, 20.12.2017, p. 819-820.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)
AU - Yu, Yeisoo
AU - Lee, Hyun Oh
AU - Chin, Joong Hyoun
AU - Park, Han Yong
AU - Yoo, Soo Cheul
PY - 2017/12/20
Y1 - 2017/12/20
N2 - Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.
AB - Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.
KW - aus-type
KW - chloroplast genome
KW - N22
KW - Nagina-22
KW - Oryza sativa
KW - Poaceae
UR - http://www.scopus.com/inward/record.url?scp=85035071876&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85035071876&partnerID=8YFLogxK
U2 - 10.1080/23802359.2017.1407710
DO - 10.1080/23802359.2017.1407710
M3 - Article
AN - SCOPUS:85035071876
VL - 2
SP - 819
EP - 820
JO - Mitochondrial DNA Part B: Resources
JF - Mitochondrial DNA Part B: Resources
SN - 2380-2359
IS - 2
ER -