The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)

Yeisoo Yu; Hyun Oh Lee; Joong Hyoun Chin; Han Yong Park; Soo Cheul Yoo

doi:10.1080/23802359.2017.1407710

The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)

Yeisoo Yu, Hyun Oh Lee, Joong Hyoun Chin, Han Yong Park, Soo Cheul Yoo

Plant Sciences, School of

Research output: Contribution to journal › Article › peer-review

3 Scopus citations

Abstract

Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.

Original language	English (US)
Pages (from-to)	819-820
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	2
Issue number	2
DOIs	https://doi.org/10.1080/23802359.2017.1407710
State	Published - Dec 20 2017

Keywords

N22
Nagina-22
Oryza sativa
Poaceae
aus-type
chloroplast genome

ASJC Scopus subject areas

Molecular Biology
Genetics

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title = "The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)",

abstract = "Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.",

keywords = "N22, Nagina-22, Oryza sativa, Poaceae, aus-type, chloroplast genome",

author = "Yeisoo Yu and Lee, {Hyun Oh} and Chin, {Joong Hyoun} and Park, {Han Yong} and Yoo, {Soo Cheul}",

note = "Funding Information: This research was supported by the Next Biogreen 21 program (Project no. PJ01101101) of the Rural Development Administration (RDA), Republic of Korea. This research was also supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (No. 2017R1D1A1B04034862).",

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AU - Yu, Yeisoo

AU - Lee, Hyun Oh

AU - Chin, Joong Hyoun

AU - Park, Han Yong

AU - Yoo, Soo Cheul

N1 - Funding Information: This research was supported by the Next Biogreen 21 program (Project no. PJ01101101) of the Rural Development Administration (RDA), Republic of Korea. This research was also supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (No. 2017R1D1A1B04034862).

PY - 2017/12/20

Y1 - 2017/12/20

N2 - Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.

AB - Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.

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